Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011460 Solanum tuberosum HOM05D004756 ORTHO05D005793 3.4e-52 208.0 102 100.0
Sopen10g003750 Solanum pennellii HOM05D004756 ORTHO05D005793 2.7e-49 198.4 102 95.1
CAN.G449.74 Capsicum annuum HOM05D004756 ORTHO05D005793 5.0e-43 177.6 102 85.3
CAN.G577.1 Capsicum annuum HOM05D004756 ORTHO05D005793 1.4e-40 169.5 102 81.4
PGSC0003DMG400011672 Solanum tuberosum HOM05D004756 ORTHO05D005793 3.7e-38 161.4 78 100.0
Nitab4.5_0002027g0100 Nicotiana tabacum HOM05D004756 ORTHO05D005793 1.0e-27 126.7 81 74.1
Dinv06277 Davidia involucrata HOM05D004756 ORTHO05D005793 2.0e-20 102.4 103 48.5
Lj7A536T7 Lonicera japonica HOM05D004756 ORTHO05D005793 1.0e-19 100.1 100 51.0
Solyc10g007850.3 Solanum lycopersicum HOM05D004756 ORTHO05D005793 1.1e-18 96.7 53 92.5
MSTRG.15061 Avicennia marina HOM05D004756 ORTHO05D005793 1.5e-18 96.3 102 48.0
Ciclev10024315m.g Citrus clementina HOM05D004756 ORTHO05D005793 6.1e-17 90.9 101 48.5
Cc05_g09050 Coffea canephora HOM05D004756 ORTHO05D005793 1.4e-16 89.7 102 46.1
Ciclev10020437m.g Citrus clementina HOM05D004756 ORTHO05D005793 1.8e-16 89.4 101 48.5
Oeu032125.1 Olea europaea HOM05D004756 ORTHO05D005793 1.8e-16 89.4 100 49.0
Migut.M00214 Erythranthe guttata HOM05D004756 ORTHO05D005793 6.8e-16 87.4 100 44.0
Oeu011324.1 Olea europaea HOM05D004756 ORTHO05D005793 2.6e-15 85.5 102 48.0
Potri.019G014000 Populus trichocarpa HOM05D004756 ORTHO05D005793 3.4e-15 85.1 103 47.6
CANSAT54G2478 Cannabis sativa HOM05D004756 ORTHO05D005793 4.4e-15 84.7 101 41.6
Sabra19G0016400 Salix brachista HOM05D004756 ORTHO05D005793 5.8e-15 84.3 103 46.6
Rhsim06G0122800 Rhododendron simsii HOM05D004756 ORTHO05D005793 7.5e-15 84.0 103 42.7
Sabra19G0026700 Salix brachista HOM05D004756 ORTHO05D005793 1.7e-14 82.8 103 45.6
vmacro12429 Vaccinium macrocarpon HOM05D004756 ORTHO05D005793 2.2e-14 82.4 103 45.6
Ciclev10020741m.g Citrus clementina HOM05D004756 ORTHO05D005793 2.9e-14 82.0 94 47.9
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.8e-13 79.3 100 42.0
FAN18G1570 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.8e-13 79.3 100 42.0
Actinidia11184 Actinidia chinensis HOM05D004756 ORTHO05D005793 2.4e-13 79.0 100 44.0
FvH4_6g02380 Fragaria vesca HOM05D004756 ORTHO05D005793 3.2e-13 78.6 102 41.2
GSVIVG01036218001 Vitis vinifera HOM05D004756 ORTHO05D005793 3.2e-13 78.6 101 44.6
FAN09G0888 Fragaria x ananassa HOM05D004756 ORTHO05D005793 9.2e-13 77.0 100 42.0
PSO170G6485 Papaver somniferum HOM05D004756 ORTHO05D005793 2.7e-12 75.5 99 38.4
Thecc.05G277000 Theobroma cacao HOM05D004756 ORTHO05D005793 3.5e-12 75.1 102 45.1
TAR636G3098 Trochodendron aralioides HOM05D004756 ORTHO05D005793 3.5e-12 75.1 101 41.6
PSO528G0135 Papaver somniferum HOM05D004756 ORTHO05D005793 7.8e-12 73.9 101 37.6
CsaV3_1G045570 Cucumis sativus L. HOM05D004756 ORTHO05D005793 1.0e-11 73.6 100 41.0
Ah.15g093660 Amaranthus hybridus HOM05D004756 ORTHO05D005793 3.0e-11 72.0 105 36.2
MD04G1227700 Malus domestica HOM05D004756 ORTHO05D005793 6.6e-11 70.9 101 38.6
RcHm_v2.0_Chr3g0450151 Rosa chinensis HOM05D004756 ORTHO05D005793 6.6e-11 70.9 100 40.0
EL10Ac9g21026 Beta vulgaris HOM05D004756 ORTHO05D005793 8.6e-11 70.5 101 38.6
Duzib128G2034 Durio zibethinus HOM05D004756 ORTHO05D005793 1.9e-10 69.3 102 41.2
Sed0006035 Sechium edule HOM05D004756 ORTHO05D005793 1.9e-10 69.3 100 40.0
Sed0007432 Sechium edule HOM05D004756 ORTHO05D005793 1.9e-10 69.3 100 40.0
Sed0019802 Sechium edule HOM05D004756 ORTHO05D005793 1.9e-10 69.3 100 40.0
Sed0025298 Sechium edule HOM05D004756 ORTHO05D005793 1.9e-10 69.3 100 40.0
Ciclev10021087m.g Citrus clementina HOM05D004756 ORTHO05D005793 2.5e-10 68.9 101 41.6
Peaxi162Scf00035g03127 Petunia axillaris HOM05D004756 ORTHO05D005793 2.5e-10 68.9 78 56.4
MELO3C024666.2 Cucumis melo HOM05D004756 ORTHO05D005793 5.6e-10 67.8 100 40.0
Manes.07G069500 Manihot esculenta HOM05D004756 ORTHO05D005793 5.6e-10 67.8 101 37.6
Prupe.6G347300 Prunus persica HOM05D004756 ORTHO05D005793 5.6e-10 67.8 101 39.6
Hund00823 Selenicereus undatus HOM05D004756 ORTHO05D005793 7.3e-10 67.4 100 31.0
Sc21g0004350 Simmondsia chinensis HOM05D004756 ORTHO05D005793 7.3e-10 67.4 101 37.6
Nn2g12710 Nelumbo nucifera HOM05D004756 ORTHO05D005793 9.5e-10 67.0 100 37.0
ECA248G2407 Erigeron canadensis HOM05D004756 ORTHO05D005793 2.1e-09 65.9 103 35.0
PGR142G3409 Punica granatum HOM05D004756 ORTHO05D005793 2.1e-09 65.9 105 39.0
QL03p029131 Quercus lobata HOM05D004756 ORTHO05D005793 2.1e-09 65.9 100 35.0
Aqoxy2G03592 Aquilegia oxysepala HOM05D004756 ORTHO05D005793 3.6e-09 65.1 101 34.7
ClCG06G009440 Citrullus lanatus HOM05D004756 ORTHO05D005793 3.6e-09 65.1 99 38.4
AUR62024000 Chenopodium quinoa HOM05D004756 ORTHO05D005793 6.2e-09 64.3 102 37.3
Gorai.007G279800 Gossypium raimondii HOM05D004756 ORTHO05D005793 1.4e-08 63.2 105 38.1
CiPaw.07G070600 Carya illinoinensis HOM05D004756 ORTHO05D005793 1.8e-08 62.8 100 33.0
Carub.0001s0809 Capsella rubella HOM05D004756 ORTHO05D005793 4.0e-08 61.6 98 39.8
AL1G19180 Arabidopsis lyrata HOM05D004756 ORTHO05D005793 1.2e-07 60.1 98 35.7
AT1G08750 Arabidopsis thaliana HOM05D004756 ORTHO05D005793 1.2e-07 60.1 99 39.4
Gohir.A11G250600 Gossypium hirsutum HOM05D004756 ORTHO05D005793 1.5e-07 59.7 103 33.0
Sp1g07390 Schrenkiella parvula HOM05D004756 ORTHO05D005793 1.5e-07 59.7 99 35.4
COL.COLO4_15415 Corchorus olitorius HOM05D004756 ORTHO05D005793 2.0e-07 59.3 102 39.2
Sed0000709 Sechium edule HOM05D004756 ORTHO05D005793 3.4e-07 58.5 100 37.0
Thhalv10007907m.g Eutrema salsugineum HOM05D004756 ORTHO05D005793 4.4e-07 58.2 99 37.4
TPR.G15315 Trifolium pratense HOM05D004756 ORTHO05D005793 5.8e-07 57.8 101 33.7
Gohir.A11G250480 Gossypium hirsutum HOM05D004756 ORTHO05D005793 7.5e-07 57.4 105 36.2
CARHR008670 Cardamine hirsuta HOM05D004756 ORTHO05D005793 9.8e-07 57.0 99 34.3
HanXRQChr01g0015131 Helianthus annuus HOM05D004756 ORTHO05D005793 9.8e-07 57.0 99 33.3
A06p05660 Brassica napus HOM05D004756 ORTHO05D005793 1.7e-06 56.2 99 32.3
BolC5t29441H Brassica oleracea HOM05D004756 ORTHO05D005793 1.7e-06 56.2 99 32.3
BraA06t23775Z Brassica rapa HOM05D004756 ORTHO05D005793 1.7e-06 56.2 99 32.3
Haze_04391 Corylus avellana HOM05D004756 ORTHO05D005793 2.2e-06 55.8 100 33.0
Actinidia12823 Actinidia chinensis HOM05D000054 ORTHO05D005793 3.7e-06 55.1 77 42.9
C05p06830 Brassica napus HOM05D004756 ORTHO05D005793 4.9e-06 54.7 103 31.1
Cfa006386 Carpinus fangiana HOM05D004756 ORTHO05D005793 4.9e-06 54.7 100 32.0
Medtr2g058550 Medicago truncatula HOM05D004756 ORTHO05D005793 6.4e-06 54.3 102 32.4


User provided reference genes

Program Settings