Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.2e-54 217.6 272 100.0
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 4.9e-37 159.1 109 86.2
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 1.9e-36 157.1 107 86.0
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.6e-32 142.9 99 86.9
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.9e-31 138.7 106 80.2
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 1.3e-29 134.4 100 79.0
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.8e-29 132.9 101 80.2
Nitab4.5_0000105g0090 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.7e-18 95.1 77 75.3
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 1.5e-17 94.4 109 56.9
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 4.8e-16 89.4 84 63.1
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 8.1e-16 88.6 106 55.7
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.4e-15 87.8 105 57.1
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 6.9e-15 85.5 106 53.8
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 9.0e-15 85.1 98 57.1
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 1.2e-14 84.7 106 53.8
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 1.2e-14 84.7 85 61.2
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 1.5e-14 84.3 109 53.2
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 1.5e-14 84.3 104 55.8
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 2.0e-14 84.0 90 57.8
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 2.6e-14 83.6 114 50.9
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 3.4e-14 83.2 109 52.3
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 3.4e-14 83.2 126 50.0
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 5.8e-14 82.4 114 52.6
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 5.8e-14 82.4 113 52.2
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 7.6e-14 82.0 87 57.5
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 7.6e-14 82.0 82 59.8
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 9.9e-14 81.6 110 54.5
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 9.9e-14 81.6 105 52.4
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 9.9e-14 81.6 73 64.4
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 9.9e-14 81.6 110 50.9
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 1.3e-13 81.3 87 57.5
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 1.3e-13 81.3 103 55.3
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.3e-13 81.3 87 57.5
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 1.3e-13 81.3 87 57.5
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.7e-13 80.9 85 57.6
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 1.7e-13 80.9 102 55.9
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 1.7e-13 80.9 107 56.1
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 2.2e-13 80.5 114 50.0
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 2.2e-13 80.5 96 58.3
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 2.9e-13 80.1 106 54.7
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 2.9e-13 80.1 106 54.7
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 3.8e-13 79.7 117 51.3
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 3.8e-13 79.7 105 52.4
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 4.9e-13 79.3 99 55.6
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 4.9e-13 79.3 95 55.8
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 4.9e-13 79.3 107 51.4
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 4.9e-13 79.3 107 48.6
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 4.9e-13 79.3 104 51.0
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 4.9e-13 79.3 87 58.6
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 6.4e-13 79.0 73 61.6
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.4e-13 79.0 109 51.4
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 6.4e-13 79.0 104 52.9
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 8.4e-13 78.6 98 54.1
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 8.4e-13 78.6 98 57.1
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 8.4e-13 78.6 85 60.0
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 8.4e-13 78.6 100 52.0
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 1.1e-12 78.2 107 49.5
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 1.4e-12 77.8 109 56.0
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.4e-12 77.8 106 51.9
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.4e-12 77.8 110 50.9
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 1.4e-12 77.8 82 58.5
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.9e-12 77.4 109 52.3
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 1.9e-12 77.4 105 53.3
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 1.9e-12 77.4 109 52.3
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 2.4e-12 77.0 105 52.4
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 3.2e-12 76.6 100 55.0
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 3.2e-12 76.6 111 50.5
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 3.2e-12 76.6 85 57.6
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 3.2e-12 76.6 113 47.8
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 4.2e-12 76.3 84 57.1
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 5.5e-12 75.9 100 54.0
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 5.5e-12 75.9 95 53.7
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 5.5e-12 75.9 95 53.7
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 5.5e-12 75.9 95 53.7
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 5.5e-12 75.9 95 53.7
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.5e-12 75.9 112 52.7
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 5.5e-12 75.9 81 56.8
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 5.5e-12 75.9 105 48.6
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 5.5e-12 75.9 102 49.0
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 7.1e-12 75.5 100 53.0
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 7.1e-12 75.5 100 53.0
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 7.1e-12 75.5 105 49.5
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 7.1e-12 75.5 110 51.8
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 7.1e-12 75.5 100 52.0
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 9.3e-12 75.1 107 48.6
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 9.3e-12 75.1 110 50.0
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 9.3e-12 75.1 76 56.6
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 1.2e-11 74.7 106 53.8
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 1.6e-11 74.3 95 52.6
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.7e-11 73.6 122 47.5
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 2.7e-11 73.6 79 54.4
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.7e-11 73.6 103 49.5
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.7e-11 73.6 96 53.1
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 3.5e-11 73.2 95 53.7
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 4.6e-11 72.8 106 53.8
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 4.6e-11 72.8 100 55.0
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 4.6e-11 72.8 100 55.0
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 4.6e-11 72.8 65 60.0
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 6.0e-11 72.4 81 54.3
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 6.0e-11 72.4 87 57.5
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 6.0e-11 72.4 103 50.5
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 7.9e-11 72.0 110 47.3
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 7.9e-11 72.0 103 50.5
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 7.9e-11 72.0 102 50.0
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.0e-10 71.6 93 52.7
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.0e-10 71.6 107 51.4
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.3e-10 71.2 110 48.2
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.3e-10 71.2 110 48.2
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 1.8e-10 70.9 81 53.1
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 3.9e-10 69.7 108 50.9
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.9e-10 69.7 88 53.4
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 3.9e-10 69.7 76 50.0
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 5.1e-10 69.3 110 49.1
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 5.1e-10 69.3 88 54.5
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 5.1e-10 69.3 90 52.2
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 5.1e-10 69.3 107 50.5
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.7e-10 68.9 105 46.7
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 6.7e-10 68.9 99 51.5
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 6.7e-10 68.9 103 51.5
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.7e-10 68.6 69 56.5
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 1.5e-09 67.8 70 57.1
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.9e-09 67.4 117 46.2
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 1.9e-09 67.4 111 45.9
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.9e-09 67.4 107 47.7
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.5e-09 67.0 70 57.1
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 2.5e-09 67.0 70 57.1
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 2.5e-09 67.0 92 47.8
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 3.3e-09 66.6 106 47.2
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 4.3e-09 66.2 79 49.4
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 5.6e-09 65.9 90 51.1
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 7.4e-09 65.5 118 45.8
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.6e-08 64.3 71 50.7
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.1e-08 63.9 77 49.4
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.7e-08 63.2 59 55.9
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.7e-08 63.2 59 55.9
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 4.8e-08 62.8 105 43.8
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 6.2e-08 62.4 72 51.4
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 6.2e-08 62.4 112 44.6
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 6.2e-08 62.4 74 54.1
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.2e-08 62.4 88 50.0
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 1.1e-07 61.6 72 54.2
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 1.1e-07 61.6 99 47.5
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.1e-07 61.6 92 46.7
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 1.4e-07 61.2 104 47.1
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.4e-07 61.2 98 44.9
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 1.8e-07 60.8 55 56.4
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 1.8e-07 60.8 111 43.2
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 3.1e-07 60.1 108 44.4
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 6.9e-07 58.9 88 48.9
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.9e-07 58.9 88 47.7
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.5e-06 57.8 54 55.6
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 1.5e-06 57.8 82 48.8
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 2.6e-06 57.0 99 48.5
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 3.4e-06 56.6 92 47.8
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 7.6e-06 55.5 85 47.1
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 7.6e-06 55.5 115 40.9
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 7.6e-06 55.5 51 54.9
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 1.0e-05 55.1 105 44.8


User provided reference genes

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