Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.2e-37 159.5 89 100.0
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.2e-24 116.3 89 78.7
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 1.2e-24 116.3 89 78.7
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 6.5e-23 110.5 80 82.5
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.4e-17 92.0 87 65.5
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.6e-16 89.4 83 67.5
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.7e-16 87.0 83 66.3
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 3.8e-15 84.7 95 62.1
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.9e-14 82.4 64 71.9
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 2.5e-14 82.0 87 59.8
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 7.2e-14 80.5 88 58.0
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.6e-13 79.3 99 57.6
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 4.7e-13 77.8 83 56.6
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 4.7e-13 77.8 100 54.0
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.4e-12 76.3 84 58.3
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 4.0e-12 74.7 88 54.5
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 5.2e-12 74.3 85 52.9
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.2e-12 74.3 59 69.5
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 6.8e-12 73.9 90 54.4
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 6.8e-12 73.9 90 55.6
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 8.9e-12 73.6 92 53.3
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.2e-11 73.2 90 55.6
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 1.5e-11 72.8 66 59.1
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 2.6e-11 72.0 66 59.1
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 2.6e-11 72.0 66 59.1
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 2.6e-11 72.0 66 59.1
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 2.6e-11 72.0 66 59.1
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.6e-11 72.0 95 53.7
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 2.6e-11 72.0 89 53.9
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 3.4e-11 71.6 89 52.8
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 4.4e-11 71.2 95 50.5
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 4.4e-11 71.2 86 52.3
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 5.7e-11 70.9 96 51.0
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 5.7e-11 70.9 90 54.4
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 7.5e-11 70.5 66 57.6
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 7.5e-11 70.5 86 52.3
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 7.5e-11 70.5 90 52.2
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 1.7e-10 69.3 66 56.1
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 1.7e-10 69.3 81 54.3
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 2.8e-10 68.6 82 51.2
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 3.7e-10 68.2 85 48.2
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 4.9e-10 67.8 86 51.2
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 6.3e-10 67.4 93 46.2
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 6.3e-10 67.4 88 47.7
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 6.3e-10 67.4 84 52.4
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.3e-10 67.4 87 54.0
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.3e-10 67.4 83 53.0
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 6.3e-10 67.4 80 51.2
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 8.3e-10 67.0 101 48.5
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 8.3e-10 67.0 82 53.7
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 8.3e-10 67.0 74 54.1
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 1.1e-09 66.6 82 52.4
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 1.1e-09 66.6 83 53.0
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.4e-09 66.2 76 52.6
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 1.4e-09 66.2 87 52.9
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 1.4e-09 66.2 81 50.6
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 1.4e-09 66.2 86 53.5
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.8e-09 65.9 85 48.2
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 2.4e-09 65.5 82 53.7
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 2.4e-09 65.5 81 53.1
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.1e-09 65.1 92 48.9
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 3.1e-09 65.1 82 52.4
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 4.1e-09 64.7 78 48.7
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 4.1e-09 64.7 79 51.9
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 5.4e-09 64.3 86 46.5
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 5.4e-09 64.3 86 46.5
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 5.4e-09 64.3 90 47.8
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 5.4e-09 64.3 87 49.4
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 7.0e-09 63.9 65 53.8
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 7.0e-09 63.9 85 45.9
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 9.2e-09 63.5 89 46.1
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 9.2e-09 63.5 75 50.7
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 9.2e-09 63.5 89 49.4
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.2e-08 63.2 80 48.8
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.2e-08 63.2 84 51.2
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.2e-08 63.2 81 48.1
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 1.2e-08 63.2 94 46.8
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.2e-08 63.2 99 48.5
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 1.2e-08 63.2 76 51.3
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.2e-08 63.2 91 53.8
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 1.6e-08 62.8 86 45.3
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 1.6e-08 62.8 66 54.5
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.6e-08 62.8 82 50.0
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.6e-08 62.8 76 53.9
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 1.6e-08 62.8 93 46.2
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.6e-08 62.8 80 48.8
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 1.6e-08 62.8 83 51.8
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 1.6e-08 62.8 84 52.4
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 2.0e-08 62.4 86 45.3
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 2.0e-08 62.4 86 47.7
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 2.0e-08 62.4 101 48.5
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 2.0e-08 62.4 76 52.6
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 2.0e-08 62.4 86 46.5
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 2.7e-08 62.0 66 50.0
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 2.7e-08 62.0 100 46.0
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.5e-08 61.6 83 49.4
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 3.5e-08 61.6 87 46.0
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 3.5e-08 61.6 97 44.3
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 4.5e-08 61.2 86 46.5
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 4.5e-08 61.2 86 46.5
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 4.5e-08 61.2 86 46.5
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 4.5e-08 61.2 82 50.0
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 4.5e-08 61.2 101 44.6
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.5e-08 61.2 76 52.6
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 4.5e-08 61.2 87 47.1
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 5.9e-08 60.8 94 47.9
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 5.9e-08 60.8 82 52.4
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 5.9e-08 60.8 87 47.1
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 7.8e-08 60.5 94 44.7
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 7.8e-08 60.5 101 45.5
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.0e-07 60.1 86 45.3
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.0e-07 60.1 88 47.7
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.0e-07 60.1 86 46.5
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 1.3e-07 59.7 81 54.3
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 1.7e-07 59.3 85 43.5
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 1.7e-07 59.3 66 51.5
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 1.7e-07 59.3 73 47.9
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.9e-07 58.5 76 50.0
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 3.9e-07 58.2 85 43.5
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 3.9e-07 58.2 85 48.2
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 3.9e-07 58.2 92 42.4
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 5.0e-07 57.8 107 42.1
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 5.0e-07 57.8 83 49.4
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 6.6e-07 57.4 88 47.7
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 6.6e-07 57.4 88 47.7
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 6.6e-07 57.4 86 46.5
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 8.6e-07 57.0 82 42.7
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.5e-06 56.2 75 46.7
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 1.5e-06 56.2 75 46.7
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 1.9e-06 55.8 64 50.0
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 1.9e-06 55.8 87 46.0
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 2.5e-06 55.5 86 48.8
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.5e-06 55.5 87 46.0
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 3.3e-06 55.1 86 46.5
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 5.6e-06 54.3 101 44.6
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 5.6e-06 54.3 73 46.6
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 7.3e-06 53.9 82 42.7
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 9.5e-06 53.5 84 42.9
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 9.5e-06 53.5 88 46.6


User provided reference genes

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