Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011426 Solanum tuberosum HOM05D000092 ORTHO05D000042 2.8e-115 418.7 221 100.0
Sopen04g025680 Solanum pennellii HOM05D000092 ORTHO05D000042 3.6e-46 189.1 237 54.4
CAN.G960.2 Capsicum annuum HOM05D000092 ORTHO05D000042 6.1e-46 188.3 187 62.0
PGSC0003DMG400018900 Solanum tuberosum HOM05D000092 ORTHO05D000042 2.3e-45 186.4 191 58.1
PGSC0003DMG401016933 Solanum tuberosum HOM05D000092 ORTHO05D000042 5.2e-45 185.3 187 61.5
CAN.G1161.51 Capsicum annuum HOM05D000092 ORTHO05D000042 1.2e-44 184.1 188 60.6
CAN.G1161.58 Capsicum annuum HOM05D000092 ORTHO05D000042 7.5e-44 181.4 187 61.0
Solyc04g005540.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 7.5e-44 181.4 188 60.1
Sopen04g001560 Solanum pennellii HOM05D000092 ORTHO05D000042 9.8e-44 181.0 186 59.7
Solyc07g044785.1 Solanum lycopersicum HOM05D000092 ORTHO05D000042 1.7e-43 180.3 191 57.1
Solyc04g057840.1 Solanum lycopersicum HOM05D000092 ORTHO05D000042 2.2e-43 179.9 187 58.8
PGSC0003DMG403008349 Solanum tuberosum HOM05D000092 ORTHO05D000042 3.7e-43 179.1 188 58.0
CAN.G641.6 Capsicum annuum HOM05D000092 ORTHO05D000042 4.9e-43 178.7 187 58.3
Sopen12g022450 Solanum pennellii HOM05D000092 ORTHO05D000042 1.1e-42 177.6 187 59.4
CAN.G641.10 Capsicum annuum HOM05D000092 ORTHO05D000042 9.2e-42 174.5 188 58.5
CAN.G1161.13 Capsicum annuum HOM05D000092 ORTHO05D000042 1.6e-41 173.7 187 59.4
CAN.G1161.47 Capsicum annuum HOM05D000092 ORTHO05D000042 1.3e-40 170.6 187 56.1
Sopen12g008040 Solanum pennellii HOM05D000092 ORTHO05D000042 1.3e-40 170.6 189 56.1
CAN.G1161.41 Capsicum annuum HOM05D000092 ORTHO05D000042 2.3e-40 169.9 183 58.5
CAN.G1161.16 Capsicum annuum HOM05D000092 ORTHO05D000042 5.0e-40 168.7 192 57.3
CAN.G960.38 Capsicum annuum HOM05D000092 ORTHO05D000042 1.1e-39 167.5 188 56.9
Solyc12g044190.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 1.1e-39 167.5 190 58.9
Solyc04g005550.2 Solanum lycopersicum HOM05D000092 ORTHO05D000042 1.9e-39 166.8 189 56.6
PGSC0003DMG402016933 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.6e-38 163.7 188 57.4
Sopen04g001580 Solanum pennellii HOM05D000092 ORTHO05D000042 2.1e-38 163.3 189 55.0
Solyc12g044200.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 6.1e-38 161.8 190 56.3
CAN.G641.5 Capsicum annuum HOM05D000092 ORTHO05D000042 1.0e-37 161.0 187 56.1
CAN.G1161.11 Capsicum annuum HOM05D000092 ORTHO05D000042 5.2e-37 158.7 169 56.8
Peaxi162Scf00003g04738 Petunia axillaris HOM05D000092 ORTHO05D000042 1.5e-36 157.1 185 54.1
PGSC0003DMG400010887 Solanum tuberosum HOM05D000092 ORTHO05D000042 5.7e-36 155.2 227 47.6
Peaxi162Scf00739g00123 Petunia axillaris HOM05D000092 ORTHO05D000042 1.1e-34 151.0 185 53.0
Solyc12g044170.1 Solanum lycopersicum HOM05D000092 ORTHO05D000042 9.2e-34 147.9 173 54.3
Nitab4.5_0000358g0090 Nicotiana tabacum HOM05D000092 ORTHO05D000042 4.0e-29 132.5 182 47.8
PGSC0003DMG400043863 Solanum tuberosum HOM05D000092 ORTHO05D000042 2.0e-28 130.2 87 77.0
PGSC0003DMG400018901 Solanum tuberosum HOM05D000092 ORTHO05D000042 5.8e-28 128.6 187 45.5
PGSC0003DMG402007575 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.9e-26 123.6 86 74.4
PGSC0003DMG403000927 Solanum tuberosum HOM05D000092 ORTHO05D000042 2.4e-26 123.2 132 56.8
PGSC0003DMG403003025 Solanum tuberosum HOM05D000092 ORTHO05D000042 5.4e-26 122.1 187 46.5
Peaxi162Scf00007g00431 Petunia axillaris HOM05D000092 ORTHO05D000042 3.5e-25 119.4 182 44.5
PGSC0003DMG400046580 Solanum tuberosum HOM05D000092 ORTHO05D000042 7.8e-25 118.2 83 72.3
PGSC0003DMG402008349 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.0e-24 117.9 87 71.3
PGSC0003DMG400008185 Solanum tuberosum HOM05D000092 ORTHO05D000042 3.3e-23 112.8 87 71.3
PGSC0003DMG400021948 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.2e-22 110.9 89 69.7
Sopen04g019300 Solanum pennellii HOM05D000092 ORTHO05D000042 3.6e-22 109.4 97 63.9
PGSC0003DMG402011427 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.4e-21 107.5 76 72.4
Sopen10g029660 Solanum pennellii HOM05D000092 ORTHO05D000042 1.5e-20 104.0 167 41.9
CAN.G360.7 Capsicum annuum HOM05D000092 ORTHO05D000042 2.6e-20 103.2 88 68.2
Solyc10g055060.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 7.5e-20 101.7 256 35.2
Sopen10g029640 Solanum pennellii HOM05D000092 ORTHO05D000042 9.8e-20 101.3 80 65.0
Solyc10g079020.1 Solanum lycopersicum HOM05D000092 ORTHO05D000042 1.3e-19 100.9 86 65.1
PGSC0003DMG400010953 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.7e-19 100.5 88 63.6
CAN.G638.65 Capsicum annuum HOM05D000092 ORTHO05D000042 6.4e-19 98.6 88 61.4
Sopen01g028960 Solanum pennellii HOM05D000092 ORTHO05D000042 6.4e-19 98.6 174 42.0
Peaxi162Scf00003g00479 Petunia axillaris HOM05D000092 ORTHO05D000042 1.4e-18 97.4 184 39.7
PGSC0003DMG402017416 Solanum tuberosum HOM05D000092 ORTHO05D000042 5.4e-18 95.5 138 45.7
CAN.G1161.52 Capsicum annuum HOM05D000092 ORTHO05D000042 9.2e-18 94.7 88 62.5
CAN.G960.28 Capsicum annuum HOM05D000092 ORTHO05D000042 1.2e-17 94.4 89 60.7
Sopen10g027130 Solanum pennellii HOM05D000092 ORTHO05D000042 2.1e-17 93.6 91 62.6
PGSC0003DMG400030266 Solanum tuberosum HOM05D000092 ORTHO05D000042 2.7e-17 93.2 70 68.6
CAN.G641.2 Capsicum annuum HOM05D000092 ORTHO05D000042 3.5e-17 92.8 187 39.6
PGSC0003DMG400019094 Solanum tuberosum HOM05D000092 ORTHO05D000042 3.5e-17 92.8 86 62.8
PGSC0003DMG400018898 Solanum tuberosum HOM05D000092 ORTHO05D000042 4.6e-17 92.4 70 67.1
Solyc10g055080.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 7.8e-17 91.7 166 41.6
Sopen12g008010 Solanum pennellii HOM05D000092 ORTHO05D000042 1.0e-16 91.3 87 57.5
Solyc10g055120.1 Solanum lycopersicum HOM05D000092 ORTHO05D000042 1.3e-16 90.9 68 69.1
PGSC0003DMG400018902 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.3e-16 90.9 66 71.2
CAN.G1117.2 Capsicum annuum HOM05D000092 ORTHO05D000042 1.7e-16 90.5 87 59.8
CAN.G638.66 Capsicum annuum HOM05D000092 ORTHO05D000042 1.7e-16 90.5 122 47.5
Solyc01g067160.4 Solanum lycopersicum HOM05D000092 ORTHO05D000042 2.3e-16 90.1 90 57.8
Peaxi162Scf00000g00843 Petunia axillaris HOM05D000092 ORTHO05D001673 3.9e-16 89.4 169 37.9
CAN.G641.3 Capsicum annuum HOM05D000092 ORTHO05D000042 6.6e-16 88.6 70 67.1
Peaxi162Scf00003g04724 Petunia axillaris HOM05D000092 ORTHO05D000042 6.6e-16 88.6 184 38.0
Solyc04g048910.1 Solanum lycopersicum HOM05D000092 ORTHO05D000042 6.6e-16 88.6 65 70.8
CAN.G3331.2 Capsicum annuum HOM05D000092 ORTHO05D000042 1.9e-15 87.0 87 58.6
Duzib177G1011 Durio zibethinus HOM05D000092 ORTHO05D000042 1.9e-15 87.0 178 33.1
PGSC0003DMG400047092 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.9e-15 87.0 70 65.7
CAN.G641.7 Capsicum annuum HOM05D000092 ORTHO05D000042 2.5e-15 86.7 77 62.3
Solyc02g036280.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 3.3e-15 86.3 163 39.3
Sopen02g011670 Solanum pennellii HOM05D000092 ORTHO05D000042 4.3e-15 85.9 163 38.7
Peaxi162Scf00253g00314 Petunia axillaris HOM05D000092 ORTHO05D000042 1.2e-14 84.3 79 60.8
Solyc10g074640.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 1.2e-14 84.3 88 59.1
PGSC0003DMG400021477 Solanum tuberosum HOM05D000092 ORTHO05D000042 1.6e-14 84.0 183 37.2
CAN.G313.14 Capsicum annuum HOM05D000092 ORTHO05D000042 3.6e-14 82.8 69 66.7
CAN.G959.29 Capsicum annuum HOM05D000092 ORTHO05D000042 5.2e-13 79.0 79 62.0
Sopen10g029280 Solanum pennellii HOM05D000092 ORTHO05D000042 5.2e-13 79.0 162 38.3
Dinv07579 Davidia involucrata HOM05D000092 ORTHO05D000042 1.3e-11 74.3 197 29.9
Dinv18646 Davidia involucrata HOM05D000092 ORTHO05D000042 2.2e-11 73.6 175 29.7
Duzib177G0834 Durio zibethinus HOM05D000092 ORTHO05D000042 3.2e-10 69.7 196 29.6
Duzib177G0001 Durio zibethinus HOM05D000092 ORTHO05D000042 4.1e-10 69.3 184 31.0
Hma1.2p1_0060F.1_g033260 Hydrangea macrophylla HOM05D000768 ORTHO05D000042 9.2e-10 68.2 185 29.2
Solyc12g016220.3 Solanum lycopersicum HOM05D000092 ORTHO05D000042 9.2e-10 68.2 56 64.3
Dinv08246 Davidia involucrata HOM05D000092 ORTHO05D000042 1.6e-09 67.4 198 28.8
Thecc.05G318300 Theobroma cacao HOM05D000092 ORTHO05D000042 1.6e-09 67.4 181 29.8
Dinv07585 Davidia involucrata HOM05D000092 ORTHO05D000042 4.6e-09 65.9 180 27.2
Medtr5g036460 Medicago truncatula HOM05D000092 ORTHO05D000042 4.6e-09 65.9 266 24.1
PGR083G2612 Punica granatum HOM05D000092 ORTHO05D000042 6.0e-09 65.5 197 28.9
Thecc.05G296500 Theobroma cacao HOM05D000092 ORTHO05D000042 7.8e-09 65.1 183 29.0
Peaxi162Scf34220g00001 Petunia axillaris HOM05D000092 ORTHO05D000042 1.0e-08 64.7 63 55.6
QL03p002295 Quercus lobata HOM05D000092 ORTHO05D000042 1.0e-08 64.7 184 30.4
Dinv13385 Davidia involucrata HOM05D000092 ORTHO05D000042 1.3e-08 64.3 198 28.8
Gohir.A10G241400 Gossypium hirsutum HOM05D000092 ORTHO05D000042 1.3e-08 64.3 184 28.3
RcHm_v2.0_Chr5g0016111 Rosa chinensis HOM05D000092 ORTHO05D000042 1.3e-08 64.3 188 27.7
vmacro23497 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 1.3e-08 64.3 187 30.5
PGR102G3168 Punica granatum HOM05D000101 ORTHO05D000089 1.7e-08 63.9 189 28.6
Thecc.05G295000 Theobroma cacao HOM05D000092 ORTHO05D000042 3.0e-08 63.2 183 29.0
Thecc.05G295100 Theobroma cacao HOM05D000092 ORTHO05D000042 3.0e-08 63.2 181 28.7
Haze_04282 Corylus avellana HOM05D000092 ORTHO05D000042 5.1e-08 62.4 176 29.5
Duzib177G0993 Durio zibethinus HOM05D000092 ORTHO05D000042 5.1e-08 62.4 178 30.9
Rhsim03G0023800 Rhododendron simsii HOM05D000092 ORTHO05D000042 6.6e-08 62.0 155 32.9
Dinv26261 Davidia involucrata HOM05D000092 ORTHO05D000042 8.6e-08 61.6 150 32.0
Duzib106G0165 Durio zibethinus HOM05D000092 ORTHO05D000042 1.1e-07 61.2 192 30.2
Lj1A1098G65 Lonicera japonica HOM05D000092 ORTHO05D000042 1.1e-07 61.2 186 23.7
Phvul.010G104500 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 1.9e-07 60.5 221 25.3
CiPaw.08G176700 Carya illinoinensis HOM05D000092 ORTHO05D000042 2.5e-07 60.1 213 27.2
Dinv40988 Davidia involucrata HOM05D000092 ORTHO05D000042 2.5e-07 60.1 188 31.4
Duzib106G0134 Durio zibethinus HOM05D000092 ORTHO05D000042 2.5e-07 60.1 182 32.4
Lj6A184T21 Lonicera japonica HOM05D000092 ORTHO05D000042 2.5e-07 60.1 210 24.8
Lj6C190T0 Lonicera japonica HOM05D000092 ORTHO05D000042 2.5e-07 60.1 170 25.9
PGR031G0188 Punica granatum HOM05D000092 ORTHO05D000042 2.5e-07 60.1 186 28.5
Rhsim02G0094400 Rhododendron simsii HOM05D000092 ORTHO05D000042 2.5e-07 60.1 181 30.9
RhsimUnG0090700 Rhododendron simsii HOM05D000046 ORTHO05D000042 3.3e-07 59.7 179 30.7
Dinv12839 Davidia involucrata HOM05D000092 ORTHO05D000042 4.3e-07 59.3 192 27.1
Prupe.3G016700 Prunus persica HOM05D000092 ORTHO05D000042 4.3e-07 59.3 177 30.5
Thecc.05G203000 Theobroma cacao HOM05D000092 ORTHO05D000042 4.3e-07 59.3 184 31.0
Thecc.K0003900 Theobroma cacao HOM05D000092 ORTHO05D000042 4.3e-07 59.3 183 31.7
Haze_04281 Corylus avellana HOM05D000092 ORTHO05D000042 5.6e-07 58.9 176 29.5
QL03p002643 Quercus lobata HOM05D000092 ORTHO05D000042 5.6e-07 58.9 197 28.4
vmacro23053 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 5.6e-07 58.9 79 40.5
arahy.Tifrunner.gnm1.ann1.CRWA07 Arachis hypogaea HOM05D000092 ORTHO05D000042 7.3e-07 58.5 166 33.1
CsaV3_2G036150 Cucumis sativus L. HOM05D000092 ORTHO05D000042 7.3e-07 58.5 154 29.2
Thecc.05G317600 Theobroma cacao HOM05D000467 ORTHO05D000379 7.3e-07 58.5 186 28.0
Cpa.g.c32363 Carica papaya HOM05D000092 ORTHO05D000042 9.6e-07 58.2 191 32.5
Haze_23738 Corylus avellana HOM05D000092 ORTHO05D000042 9.6e-07 58.2 160 32.5
Dinv10941 Davidia involucrata HOM05D000092 ORTHO05D000042 9.6e-07 58.2 78 43.6
Dinv12837 Davidia involucrata HOM05D000092 ORTHO05D000042 9.6e-07 58.2 163 28.8
Duzib177G0159 Durio zibethinus HOM05D000092 ORTHO05D000042 9.6e-07 58.2 173 27.7
FAN06G4836 Fragaria x ananassa HOM05D000092 ORTHO05D000042 9.6e-07 58.2 200 28.5
CANSAT11G1726 Cannabis sativa HOM05D000092 ORTHO05D000042 1.2e-06 57.8 193 27.5
Dinv07581 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-06 57.8 63 46.0
Dinv07584 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-06 57.8 63 47.6
Duzib177G0454 Durio zibethinus HOM05D000092 ORTHO05D000042 1.2e-06 57.8 173 27.2
Thecc.05G297300 Theobroma cacao HOM05D000092 ORTHO05D000042 1.2e-06 57.8 176 29.5
vmacro07802 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 1.2e-06 57.8 140 31.4
Duzib177G0107 Durio zibethinus HOM05D000092 ORTHO05D000042 1.6e-06 57.4 180 30.6
FvH4_6g53580 Fragaria vesca HOM05D000092 ORTHO05D000042 1.6e-06 57.4 178 27.0
Peaxi162Scf00003g05030 Petunia axillaris HOM05D000092 ORTHO05D000042 1.6e-06 57.4 84 42.9
Peaxi162Scf00299g00547 Petunia axillaris HOM05D000092 ORTHO05D000042 1.6e-06 57.4 97 40.2
CSS0020621 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 2.1e-06 57.0 137 28.5
Dinv01141 Davidia involucrata HOM05D000092 ORTHO05D000042 2.1e-06 57.0 80 41.2
Dinv01598 Davidia involucrata HOM05D000092 ORTHO05D000042 2.1e-06 57.0 188 30.3
Dinv09825 Davidia involucrata HOM05D033930 ORTHO05D013263 2.1e-06 57.0 79 43.0
Duzib128G0871 Durio zibethinus HOM05D000092 ORTHO05D000042 2.1e-06 57.0 164 29.9
ECA233G4968 Erigeron canadensis HOM05D000092 ORTHO05D000042 2.1e-06 57.0 178 28.1
ECA248G3545 Erigeron canadensis HOM05D000092 ORTHO05D000042 2.1e-06 57.0 181 31.5
Gohir.D11G325601 Gossypium hirsutum HOM05D000092 ORTHO05D000042 2.8e-06 56.6 171 29.8
RcHm_v2.0_Chr7g0203351 Rosa chinensis HOM05D000092 ORTHO05D000042 2.8e-06 56.6 178 28.7
Thecc.05G225500 Theobroma cacao HOM05D000092 ORTHO05D000042 2.8e-06 56.6 176 28.4
Cfa019909 Carpinus fangiana HOM05D000092 ORTHO05D000042 3.6e-06 56.2 162 31.5
Lj6A185T29 Lonicera japonica HOM05D000092 ORTHO05D000042 3.6e-06 56.2 223 23.3
Lj6A205T27 Lonicera japonica HOM05D000092 ORTHO05D000042 3.6e-06 56.2 230 23.5
Rhsim03G0102200 Rhododendron simsii HOM05D000467 ORTHO05D000379 3.6e-06 56.2 178 29.8
FAN06G3901 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.7e-06 55.8 180 28.3
Haze_04284 Corylus avellana HOM05D000092 ORTHO05D000042 6.2e-06 55.5 177 29.4
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 6.2e-06 55.5 191 28.8
vmacro09387 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 6.2e-06 55.5 84 42.9
Dinv20556 Davidia involucrata HOM05D000092 ORTHO05D000042 8.1e-06 55.1 236 27.1
Dinv20740 Davidia involucrata HOM05D000092 ORTHO05D000042 8.1e-06 55.1 236 27.1
Duzib177G0617 Durio zibethinus HOM05D000092 ORTHO05D000042 8.1e-06 55.1 192 28.1
Gorai.007G356000 Gossypium raimondii HOM05D000092 ORTHO05D000042 8.1e-06 55.1 153 28.8
HanXRQChr09g0267021 Helianthus annuus HOM05D000092 ORTHO05D000042 8.1e-06 55.1 175 30.9
Oeu053821.1 Olea europaea HOM05D000009 ORTHO05D000008 8.1e-06 55.1 137 32.1
Rhsim03G0040200 Rhododendron simsii HOM05D000092 ORTHO05D000042 8.1e-06 55.1 139 31.7
vmacro07639 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 8.1e-06 55.1 134 34.3


User provided reference genes

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