Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 0.0e+00 1224.9 636 100.0
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 0.0e+00 1211.4 636 98.7
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 0.0e+00 1211.4 636 98.7
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 0.0e+00 1146.3 638 93.7
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 0.0e+00 1114.4 643 91.0
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 0.0e+00 1109.4 638 90.6
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 0.0e+00 1090.5 635 89.6
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 0.0e+00 1081.6 627 90.1
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 5.0e-282 974.2 645 78.4
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.8e-271 939.1 645 77.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.1e-265 919.8 640 74.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.4e-265 919.5 643 74.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 2.0e-262 909.1 647 74.5
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.8e-260 902.5 633 75.0
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 5.0e-258 894.4 648 73.5
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.5e-257 892.1 637 73.8
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.1e-256 889.0 646 72.0
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.7e-256 888.6 635 73.9
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 1.3e-253 879.8 641 73.8
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 2.2e-253 879.0 645 70.7
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.4e-252 876.3 650 70.6
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 3.1e-252 875.2 650 70.3
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 4.1e-252 874.8 639 71.8
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 5.3e-252 874.4 640 72.3
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.2e-251 873.2 649 70.9
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.3e-250 869.8 649 72.0
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 1.7e-250 869.4 650 70.2
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.5e-250 867.5 648 71.3
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 7.2e-249 864.0 635 72.4
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.2e-248 863.2 660 69.5
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.0e-247 860.1 656 69.8
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 8.8e-247 857.1 645 70.4
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.5e-246 856.3 641 70.0
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 2.0e-246 855.9 648 71.3
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 3.4e-246 855.1 656 68.9
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 5.7e-246 854.4 643 69.7
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 7.5e-246 854.0 660 68.6
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.7e-245 852.8 652 69.2
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.1e-244 850.1 650 69.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 7.0e-244 847.4 641 70.2
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.2e-243 846.7 645 69.3
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.6e-243 846.3 648 69.3
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 2.7e-243 845.5 648 68.1
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 2.7e-243 845.5 650 69.2
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 4.5e-243 844.7 651 70.0
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-242 843.6 646 69.5
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.0e-242 843.6 646 69.5
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.3e-242 843.2 651 68.5
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.7e-242 842.8 642 69.8
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.2e-242 842.4 651 68.2
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.9e-242 842.0 651 68.4
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.9e-242 842.0 600 73.7
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 8.5e-242 840.5 650 69.5
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 8.5e-242 840.5 649 68.6
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.9e-241 839.3 646 69.3
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.2e-241 838.6 647 68.3
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 3.2e-241 838.6 645 68.2
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.5e-241 837.8 645 68.7
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 5.2e-239 831.2 645 69.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.2e-238 830.1 641 69.6
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 2.0e-238 829.3 653 67.4
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.6e-238 828.9 641 69.1
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 9.8e-238 827.0 644 68.2
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 6.3e-237 824.3 653 67.1
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 8.3e-237 823.9 628 71.2
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.2e-235 820.1 632 70.4
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.6e-235 819.7 654 67.3
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.0e-235 819.3 650 67.2
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 5.9e-235 817.8 656 66.8
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.0e-234 817.0 653 67.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 2.3e-234 815.8 652 67.3
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 2.3e-234 815.8 650 67.4
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.5e-233 813.1 631 68.8
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 3.3e-233 812.0 631 67.8
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 9.5e-233 810.4 652 66.3
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.2e-232 810.1 646 66.3
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.1e-232 809.3 635 67.4
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.0e-231 807.0 653 65.8
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 3.0e-231 805.4 654 65.7
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 6.8e-231 804.3 648 65.7
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.2e-230 803.5 650 64.8
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 1.5e-230 803.1 661 64.8
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 2.0e-230 802.7 656 65.9
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 2.6e-230 802.4 654 65.4
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.6e-230 802.4 622 68.2
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 7.5e-230 800.8 658 65.5
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 1.3e-229 800.0 656 65.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 2.2e-229 799.3 658 64.7
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 8.3e-229 797.3 656 64.3
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-228 796.6 654 65.1
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 2.4e-228 795.8 655 65.0
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.4e-228 795.8 653 65.1
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 2.4e-228 795.8 652 64.7
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 9.2e-228 793.9 653 65.2
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 6.6e-226 787.7 643 66.6
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.5e-225 786.6 652 63.2
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 9.5e-225 783.9 649 64.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 9.5e-225 783.9 639 66.5
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.7e-224 781.6 643 66.9
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.2e-222 776.9 656 64.6
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 7.0e-220 767.7 650 64.5
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.8e-219 764.2 651 63.7
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.3e-218 763.5 651 63.6
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.4e-215 753.4 638 62.7
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 4.0e-215 751.9 593 67.1
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 6.8e-215 751.1 654 62.2
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.2e-211 740.3 640 60.3
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.1e-211 739.6 654 61.6
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.2e-206 723.8 625 64.5
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 7.3e-201 704.5 647 61.7
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 2.6e-198 696.0 644 57.9
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 5.8e-198 694.9 541 70.2
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.4e-191 673.7 644 56.2
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 6.4e-189 664.8 636 60.2
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 3.2e-188 662.5 648 57.3
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.7e-186 656.8 635 59.5
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 2.8e-184 649.4 649 55.9
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 7.2e-164 581.6 644 51.2
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 2.2e-160 570.1 622 54.2
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.1e-159 567.8 542 60.0
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.0e-146 524.6 667 47.5
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 3.8e-141 506.1 618 49.8
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 3.8e-141 506.1 666 44.4
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 6.1e-123 445.7 670 41.6
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 2.9e-117 426.8 323 73.7
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.8e-114 417.5 351 64.1
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.6e-97 360.5 243 71.6
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 9.9e-89 332.0 399 48.1
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 6.9e-66 256.1 300 50.7
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 6.5e-40 169.9 120 79.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 4.2e-39 167.2 564 29.1
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.1e-34 151.0 122 60.7
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.5e-20 105.5 113 53.1
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 2.6e-20 104.8 93 61.3
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.1e-10 71.2 104 43.3
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 4.1e-10 70.9 41 82.9
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 1.0e-08 66.2 45 62.2
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.2e-06 59.3 50 50.0


User provided reference genes

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