Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.5e-242 842.4 434 100.0
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 1.2e-234 816.2 435 97.5
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 1.9e-232 808.9 435 96.8
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 6.3e-228 793.9 434 92.4
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 5.1e-222 774.2 434 90.8
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 4.8e-212 741.1 492 80.1
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 7.0e-211 737.3 434 88.0
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 9.5e-184 647.1 442 73.5
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 2.3e-182 642.5 444 73.4
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 3.4e-181 638.6 430 74.4
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 5.7e-181 637.9 442 71.5
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 7.5e-181 637.5 435 73.1
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 8.3e-180 634.0 438 72.1
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.8e-179 632.9 439 72.2
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 5.9e-178 627.9 433 73.0
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.6e-175 619.8 442 71.3
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 6.1e-175 617.8 432 71.1
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 8.0e-175 617.5 425 72.2
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 1.8e-174 616.3 431 71.5
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.2e-173 613.6 399 75.4
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 2.0e-173 612.8 414 73.2
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.6e-173 612.5 431 72.6
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 4.4e-173 611.7 438 70.1
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 4.4e-173 611.7 414 72.5
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 7.5e-173 610.9 436 70.0
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 7.5e-173 610.9 432 70.6
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 9.8e-173 610.5 435 70.6
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 2.2e-172 609.4 431 72.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 3.7e-172 608.6 442 69.7
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 3.2e-171 605.5 441 70.5
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.1e-171 605.1 424 72.4
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 5.4e-171 604.7 430 70.9
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 9.2e-171 604.0 436 70.6
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 1.2e-170 603.6 418 70.8
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 1.2e-170 603.6 429 72.0
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 2.7e-170 602.4 442 69.5
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.0e-169 600.5 426 71.4
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 1.3e-169 600.1 407 72.2
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.7e-169 599.7 429 71.8
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.7e-169 599.7 429 71.3
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 2.3e-169 599.4 430 70.0
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 3.0e-169 599.0 430 68.6
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 3.9e-169 598.6 418 70.3
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 1.1e-168 597.0 410 71.0
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 1.5e-168 596.7 437 68.2
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 2.5e-168 595.9 440 67.7
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 4.3e-168 595.1 409 71.4
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 2.1e-167 592.8 402 73.4
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 2.8e-167 592.4 532 60.2
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 3.6e-167 592.0 417 69.5
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 8.0e-167 590.9 392 75.5
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.4e-166 590.1 416 70.0
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 1.4e-166 590.1 416 70.2
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 3.1e-166 589.0 406 70.9
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.1e-166 589.0 432 68.3
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 6.8e-166 587.8 408 70.6
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 6.8e-166 587.8 411 72.0
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 8.9e-166 587.4 431 69.8
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 8.9e-166 587.4 423 68.8
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.2e-165 587.0 418 69.1
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 1.2e-165 587.0 437 67.0
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 2.6e-165 585.9 433 66.3
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 3.4e-165 585.5 422 70.1
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 5.8e-165 584.7 431 68.7
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 7.5e-165 584.3 408 71.6
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 2.4e-163 579.3 408 70.1
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 4.1e-163 578.6 415 68.9
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 7.0e-163 577.8 430 68.1
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 6.0e-162 574.7 410 69.8
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 7.8e-162 574.3 453 65.3
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 2.3e-161 572.8 428 67.3
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 4.7e-159 565.1 428 66.6
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 6.2e-159 564.7 428 66.6
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 1.4e-158 563.5 406 68.5
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 8.9e-158 560.8 429 66.7
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 4.4e-157 558.5 434 65.9
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 8.3e-156 554.3 444 63.7
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 7.1e-155 551.2 408 67.2
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.2e-154 550.4 421 65.3
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.0e-153 547.4 390 68.7
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 1.7e-153 546.6 398 68.6
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 6.6e-153 544.7 430 64.0
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 2.5e-152 542.7 428 65.7
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 4.3e-152 542.0 409 67.0
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 7.1e-147 524.6 374 71.1
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 9.2e-147 524.2 364 72.0
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 9.2e-147 524.2 414 64.7
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 9.2e-147 524.2 414 64.7
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 8.7e-145 517.7 360 71.7
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 1.1e-144 517.3 384 65.9
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 3.1e-142 509.2 406 61.8
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 1.5e-141 506.9 401 62.3
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.9e-137 492.3 365 69.3
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 4.6e-130 468.8 399 59.4
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 4.3e-128 462.2 321 72.3
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 8.1e-127 458.0 422 60.0
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 2.6e-125 453.0 422 58.8
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 3.2e-123 446.0 396 57.8
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 2.5e-120 436.4 328 65.9
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 5.3e-118 428.7 311 70.7
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.0e-109 400.2 292 66.4
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.7e-108 397.1 393 54.2
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 7.9e-106 388.3 316 67.1
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.5e-96 357.5 383 50.7
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.7e-95 354.0 252 71.4
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.7e-90 336.7 334 58.1
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 5.3e-86 322.4 227 75.8
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 6.5e-84 315.5 204 79.4
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 2.2e-76 290.4 405 44.7
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 1.6e-74 284.3 218 62.8
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 3.0e-65 253.4 400 39.0
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.3e-52 210.7 147 71.4
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 9.8e-48 195.3 120 77.5
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.6e-45 188.0 131 71.8
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.9e-44 183.3 131 70.2
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 5.1e-44 183.0 111 78.4
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.3e-43 179.1 131 68.7
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 9.6e-35 152.1 104 72.1
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 9.6e-35 152.1 104 72.1
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 9.6e-35 152.1 103 68.9
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.8e-33 147.9 102 76.5
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 5.3e-25 119.8 100 59.0
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 5.3e-25 119.8 68 79.4
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 6.4e-23 112.8 78 64.1
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 8.4e-23 112.5 68 76.5
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 1.9e-22 111.3 131 51.1
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 1.0e-20 105.5 133 49.6
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 5.6e-19 99.8 235 37.4
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 2.8e-18 97.4 49 87.8
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 4.8e-18 96.7 74 62.2
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 4.9e-15 86.7 51 80.4
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 1.8e-12 78.2 41 78.0
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 1.9e-11 74.7 59 66.1


User provided reference genes

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