Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 4.9e-74 281.2 156 100.0
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 4.3e-62 241.5 155 85.2
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.3e-61 240.0 154 84.4
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 5.4e-57 224.6 159 76.7
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 6.2e-53 211.1 154 74.0
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-47 193.0 160 68.1
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.2e-41 172.2 157 63.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.8e-39 166.4 155 57.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.3e-37 160.2 159 58.5
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 4.5e-35 151.8 147 55.8
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.3e-34 150.2 149 57.7
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.9e-34 149.1 157 51.6
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.5e-33 146.0 144 56.9
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 9.4e-33 144.1 145 57.2
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.2e-32 143.7 147 55.8
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-32 142.9 140 60.7
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 2.1e-32 142.9 165 50.3
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.7e-32 142.5 140 58.6
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 4.6e-32 141.7 145 53.8
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.1e-32 141.4 140 60.7
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.9e-32 141.0 145 57.9
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.4e-31 140.2 147 50.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-31 140.2 147 50.3
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-31 140.2 147 50.3
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.8e-31 139.8 155 51.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.3e-31 139.4 146 54.1
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-31 139.4 154 52.6
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 3.0e-31 139.0 151 51.7
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 3.0e-31 139.0 145 53.1
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.9e-31 138.7 145 54.5
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 6.7e-31 137.9 162 52.5
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 8.8e-31 137.5 144 51.4
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.1e-30 137.1 159 52.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.5e-30 136.7 153 51.6
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-30 136.3 151 51.0
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-30 136.3 151 51.0
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 2.0e-30 136.3 151 56.3
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.0e-30 136.3 145 53.1
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.3e-30 135.6 153 52.3
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.3e-30 135.6 136 49.3
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 5.7e-30 134.8 156 50.6
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 5.7e-30 134.8 153 50.3
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.4e-30 134.4 147 48.3
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 7.4e-30 134.4 155 54.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.7e-29 133.3 155 50.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-29 133.3 155 54.2
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.8e-29 132.5 148 52.0
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.8e-29 132.5 136 53.7
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 3.7e-29 132.1 140 53.6
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-28 130.2 130 58.5
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.4e-28 129.4 135 52.6
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.4e-28 129.4 151 51.0
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 4.1e-28 128.6 148 50.7
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 4.1e-28 128.6 156 47.4
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 6.9e-28 127.9 149 51.0
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 9.1e-28 127.5 169 48.5
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.2e-27 127.1 149 53.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.6e-27 125.9 147 49.7
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 3.4e-27 125.6 157 49.0
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.3e-26 123.6 134 49.3
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.7e-26 123.2 153 48.4
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-26 122.5 151 48.3
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 3.8e-26 122.1 142 45.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 5.0e-26 121.7 158 50.0
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 5.0e-26 121.7 142 49.3
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 5.0e-26 121.7 142 49.3
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 5.0e-26 121.7 141 48.9
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.5e-26 120.9 153 47.1
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 4.2e-25 118.6 155 45.8
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.6e-24 115.5 122 52.5
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.6e-24 115.5 149 47.0
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.6e-24 115.5 142 51.4
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.7e-24 115.2 156 48.7
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.7e-24 115.2 140 50.0
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.1e-24 114.8 148 50.7
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.1e-24 114.8 155 46.5
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.9e-24 114.4 144 50.7
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.0e-23 114.0 133 51.9
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.0e-23 112.5 125 51.2
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 3.9e-23 112.1 148 47.3
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-22 110.2 132 47.7
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.5e-22 110.2 143 44.1
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.6e-22 109.4 160 46.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.6e-22 109.4 112 53.6
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 3.3e-22 109.0 142 47.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.7e-22 108.2 116 48.3
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 7.4e-22 107.8 127 47.2
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.3e-21 107.1 162 45.7
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-21 107.1 159 45.3
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.2e-21 106.3 158 47.5
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.7e-21 105.5 166 45.2
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.8e-21 105.1 162 42.0
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.2e-21 104.4 152 44.1
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.1e-20 104.0 153 43.1
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.8e-20 103.2 161 44.7
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 4.1e-20 102.1 159 40.9
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 4.1e-20 102.1 150 44.7
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.1e-20 102.1 154 44.2
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 5.3e-20 101.7 155 42.6
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 5.3e-20 101.7 153 45.1
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 7.0e-20 101.3 116 46.6
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.0e-20 101.3 143 46.9
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 9.1e-20 100.9 93 59.1
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-19 99.8 156 44.2
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.0e-19 99.8 154 43.5
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 2.6e-19 99.4 134 42.5
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.9e-19 98.2 159 39.6
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 7.7e-19 97.8 159 39.6
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.0e-18 97.4 152 40.8
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.2e-18 96.3 152 41.4
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 2.9e-18 95.9 140 45.0
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 2.9e-18 95.9 159 41.5
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.8e-18 95.5 142 45.1
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 5.0e-18 95.1 129 48.1
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 6.5e-18 94.7 152 42.1
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 8.5e-18 94.4 142 43.7
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-17 94.0 116 46.6
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-17 94.0 104 53.8
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.1e-17 94.0 162 42.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-17 93.6 147 44.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 2.5e-17 92.8 147 42.9
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 3.2e-17 92.4 153 39.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 4.2e-17 92.0 147 44.2
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 5.5e-17 91.7 166 36.7
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 5.5e-17 91.7 141 41.1
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 5.5e-17 91.7 147 43.5
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 5.5e-17 91.7 147 43.5
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 7.2e-17 91.3 111 47.7
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-16 90.5 147 39.5
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-16 90.5 94 55.3
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-16 90.1 147 39.5
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 2.7e-16 89.4 147 42.2
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 4.7e-16 88.6 150 40.7
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 4.7e-16 88.6 125 44.0
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 6.1e-16 88.2 147 42.2
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 6.1e-16 88.2 147 42.2
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.0e-16 87.8 148 39.9
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-15 87.0 145 40.0
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-15 87.0 147 42.9
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-15 86.7 140 41.4
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-15 86.3 151 40.4
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.3e-15 86.3 152 40.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 3.0e-15 85.9 151 39.7
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-15 85.9 147 41.5
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.1e-14 84.0 140 37.9
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.0e-14 83.2 161 37.9
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-14 82.8 126 40.5
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 2.6e-14 82.8 120 44.2
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 5.7e-14 81.6 165 34.5
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 5.7e-14 81.6 165 34.5
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 7.4e-14 81.3 147 35.4
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-13 80.5 151 43.0
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.8e-13 79.3 150 36.7
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 4.8e-13 78.6 151 39.1
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-13 78.6 106 44.3
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 8.2e-13 77.8 163 36.2
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 8.2e-13 77.8 163 36.2
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 8.2e-13 77.8 140 44.3
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 3.1e-12 75.9 164 36.0
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.1e-12 75.9 144 38.9
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-12 75.9 138 35.5
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 7.0e-12 74.7 146 38.4
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.6e-11 73.6 93 45.2
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.6e-11 73.6 93 45.2
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 1.6e-11 73.6 151 37.7
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-10 70.9 120 45.0
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-10 70.9 157 33.8
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-10 70.5 127 41.7
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-10 70.5 104 45.2
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 1.7e-10 70.1 112 38.4
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 2.2e-10 69.7 156 35.3
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 2.2e-10 69.7 138 35.5
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.9e-10 69.3 141 41.1
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.1e-09 67.4 96 38.5
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 1.5e-09 67.0 141 37.6
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 1.9e-09 66.6 112 38.4
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.9e-09 66.6 140 37.1
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 2.5e-09 66.2 112 38.4
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 3.2e-09 65.9 165 33.3
ECA234G0512 Erigeron canadensis HOM05D023078 ORTHO05D003943 5.5e-09 65.1 162 38.3
ECA234G0883 Erigeron canadensis HOM05D023078 ORTHO05D003943 5.5e-09 65.1 162 38.3
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 9.4e-09 64.3 136 38.2
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 8.8e-07 57.8 149 34.2
Thhalv10009029m.g Eutrema salsugineum HOM05D008071 ORTHO05D009954 3.3e-06 55.8 154 33.8
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.4e-06 55.5 138 32.6
ECA234G1138 Erigeron canadensis HOM05D023078 ORTHO05D003943 5.7e-06 55.1 147 34.7


User provided reference genes

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