Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 2489.5 1416 100.0
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 2297.7 1515 88.3
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 2264.6 1388 87.8
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 2058.9 1525 74.8
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1998.4 1246 84.2
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1963.3 1242 85.0
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 0.0e+00 1305.8 904 78.2
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1280.8 1253 56.6
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1273.5 1231 56.5
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1268.8 1237 56.4
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1248.0 1252 54.6
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1230.3 1252 54.2
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1221.1 1235 54.7
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1206.8 1237 54.1
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1186.8 1276 52.4
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1182.9 1236 53.8
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1181.0 1235 54.1
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1162.9 1244 52.0
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1160.6 1231 52.7
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1153.7 1235 52.2
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1153.7 1111 57.2
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1142.1 1231 52.2
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1135.6 1234 51.9
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1111.3 1257 50.0
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1110.1 1065 55.8
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1105.9 1245 51.0
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1102.4 1234 51.0
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1101.3 1257 50.4
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1090.5 1255 49.2
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1088.2 1048 56.8
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1086.2 1234 51.0
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1081.2 1263 49.1
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 2.9e-311 1072.4 1231 48.9
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 4.7e-309 1065.1 1239 48.7
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 5.3e-308 1061.6 1235 49.3
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 1.3e-306 1057.0 1235 49.2
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 1.7e-306 1056.6 1064 53.6
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 3.8e-306 1055.4 1234 49.5
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 3.2e-305 1052.4 1245 48.9
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 7.8e-304 1047.7 1239 48.7
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 4.9e-298 1028.5 1048 53.7
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 4.2e-297 1025.4 1048 53.7
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 3.9e-295 1018.8 1243 45.7
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 5.1e-295 1018.5 1245 47.3
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 1.1e-294 1017.3 1226 48.4
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 1.1e-294 1017.3 1251 46.6
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 7.9e-288 994.6 1237 45.3
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 5.6e-286 988.4 1236 45.7
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 1.3e-285 987.3 1253 45.1
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 1.4e-284 983.8 1230 45.5
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 3.1e-284 982.6 1252 45.0
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 7.6e-283 978.0 1253 44.9
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 6.5e-282 974.9 1237 44.6
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 1.4e-281 973.8 1265 44.4
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 5.0e-274 948.7 1132 48.1
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 3.0e-271 939.5 1024 52.8
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 4.8e-269 932.2 861 60.0
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 6.3e-269 931.8 1217 44.2
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 6.9e-268 928.3 1050 50.2
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 7.7e-267 924.9 1075 50.2
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 7.0e-260 901.7 1137 46.1
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.1e-254 884.4 854 58.3
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 2.0e-246 857.1 915 51.5
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 7.5e-246 855.1 1244 42.9
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 1.8e-231 807.4 701 60.6
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 1.7e-229 800.8 858 51.6
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 8.3e-221 771.9 1262 39.4
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 2.0e-214 750.7 1172 40.0
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 2.1e-208 730.7 860 49.0
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 9.9e-206 721.8 861 48.4
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 7.3e-201 705.7 992 43.8
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 8.1e-192 675.6 713 52.5
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 2.0e-190 671.0 1078 38.9
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 6.4e-181 639.4 621 56.5
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 4.3e-161 573.5 1263 33.9
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 7.7e-150 536.2 1212 33.6
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 2.0e-145 521.5 1240 32.0
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.1e-135 487.3 1148 32.8
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.1e-135 487.3 1148 32.8
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 2.3e-101 375.2 449 49.9
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.5e-100 371.7 487 46.8
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 1.9e-79 302.4 1358 25.0
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 6.0e-70 270.8 349 46.1
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 9.0e-66 256.9 416 57.0
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 3.4e-33 148.7 218 39.0
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 3.4e-33 148.7 182 48.9
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 5.0e-32 144.8 120 65.0
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 2.3e-29 136.0 285 35.1
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 9.7e-28 130.6 104 67.3
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.0e-25 122.9 103 57.3
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 5.9e-17 94.7 82 58.5
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 7.0e-10 71.2 56 60.7
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 8.5e-08 64.3 277 25.3
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 2.1e-06 59.7 97 42.3
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 6.1e-06 58.2 91 38.5


User provided reference genes

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