Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011304 Solanum tuberosum HOM05D000031 ORTHO05D009544 1.9e-86 322.4 158 100.0
Solyc10g005140.1 Solanum lycopersicum HOM05D000031 ORTHO05D009544 8.2e-77 290.4 158 91.8
Sopen10g001160 Solanum pennellii HOM05D000031 ORTHO05D009544 8.2e-77 290.4 158 91.8
CAN.G465.12 Capsicum annuum HOM05D000031 ORTHO05D009544 6.5e-74 280.8 158 89.2
CAN.G971.8 Capsicum annuum HOM05D000260 ORTHO05D009544 6.5e-74 280.8 158 89.2
Nitab4.5_0005359g0040 Nicotiana tabacum HOM05D000031 ORTHO05D009544 1.4e-73 279.6 158 88.0
Nitab4.5_0007792g0020 Nicotiana tabacum HOM05D000031 ORTHO05D009544 1.2e-72 276.6 158 86.1
Peaxi162Scf00092g01518 Petunia axillaris HOM05D000031 ORTHO05D009544 4.6e-72 274.6 156 87.2
CiPaw.01G085800 Carya illinoinensis HOM05D000031 ORTHO05D009544 1.2e-43 180.3 152 65.1
Thecc.01G331700 Theobroma cacao HOM05D000031 ORTHO05D009544 4.5e-43 178.3 145 64.8
TWI14G0275 Tripterygium wilfordii HOM05D000031 ORTHO05D009544 1.7e-42 176.4 162 60.5
Gohir.A11G102000 Gossypium hirsutum HOM05D000031 ORTHO05D009544 1.5e-41 173.3 156 59.0
Gohir.D11G106600 Gossypium hirsutum HOM05D000031 ORTHO05D009544 2.5e-41 172.6 156 58.3
Gorai.007G114100 Gossypium raimondii HOM05D000031 ORTHO05D009544 2.5e-41 172.6 156 58.3
Sc23g0001670 Simmondsia chinensis HOM05D000031 ORTHO05D009544 3.2e-41 172.2 134 64.9
EL10Ac1g00164 Beta vulgaris HOM05D000031 ORTHO05D009544 9.5e-41 170.6 131 68.7
QL08p047907 Quercus lobata HOM05D000031 ORTHO05D009544 1.2e-40 170.2 130 68.5
Hma1.2p1_2492F.1_g323270 Hydrangea macrophylla HOM05D000031 ORTHO05D009544 3.6e-40 168.7 149 62.4
SalBow5G5198 Salvia bowleyana HOM05D000031 ORTHO05D009544 4.7e-40 168.3 151 59.6
Duzib138G1228 Durio zibethinus HOM05D000031 ORTHO05D009544 6.1e-40 167.9 145 62.1
Haze_15756 Corylus avellana HOM05D000031 ORTHO05D009544 8.0e-40 167.5 132 66.7
Potri.002G181100 Populus trichocarpa HOM05D000031 ORTHO05D009544 8.0e-40 167.5 163 57.7
Sabra02G0133400 Salix brachista HOM05D000031 ORTHO05D009544 1.0e-39 167.2 162 55.6
Cfa003722 Carpinus fangiana HOM05D000031 ORTHO05D009544 2.3e-39 166.0 132 65.9
Lj9A609T66 Lonicera japonica HOM05D000031 ORTHO05D009544 3.0e-39 165.6 155 61.3
CANSAT56G3381 Cannabis sativa HOM05D000031 ORTHO05D009544 5.2e-39 164.9 158 58.9
ECA234G2964 Erigeron canadensis HOM05D000031 ORTHO05D009544 6.8e-39 164.5 158 55.7
Manes.05G015400 Manihot esculenta HOM05D000031 ORTHO05D009544 8.8e-39 164.1 155 60.0
Lsat_1_v5_gn_4_35281 Lactuca sativa HOM05D000031 ORTHO05D009544 2.6e-38 162.5 155 55.5
Ciclev10019337m.g Citrus clementina HOM05D000031 ORTHO05D009544 3.4e-38 162.2 160 54.4
COL.COLO4_23062 Corchorus olitorius HOM05D000031 ORTHO05D009544 3.4e-38 162.2 132 65.9
Prupe.2G200600 Prunus persica HOM05D000031 ORTHO05D009544 3.4e-38 162.2 136 64.7
TAR375G0588 Trochodendron aralioides HOM05D000031 ORTHO05D009544 4.4e-38 161.8 130 66.9
FvH4_7g17870 Fragaria vesca HOM05D000031 ORTHO05D009544 5.7e-38 161.4 146 59.6
Ah.05g178830 Amaranthus hybridus HOM05D000031 ORTHO05D009544 9.8e-38 160.6 134 64.2
FAN06G3589 Fragaria x ananassa HOM05D000031 ORTHO05D009544 9.8e-38 160.6 146 59.6
FAN06G4017 Fragaria x ananassa HOM05D000031 ORTHO05D009544 9.8e-38 160.6 146 59.6
AUR62022686 Chenopodium quinoa HOM05D000031 ORTHO05D009544 1.7e-37 159.8 131 61.8
FAN10G0193 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.7e-37 159.8 146 59.6
FAN10G2307 Fragaria x ananassa HOM05D000031 ORTHO05D009544 1.7e-37 159.8 146 59.6
PGR031G2465 Punica granatum HOM05D000031 ORTHO05D009544 1.7e-37 159.8 151 58.3
AUR62004573 Chenopodium quinoa HOM05D000031 ORTHO05D009544 2.2e-37 159.5 131 62.6
FAN03G2874 Fragaria x ananassa HOM05D000031 ORTHO05D009544 2.2e-37 159.5 146 59.6
FAN01G3057 Fragaria x ananassa HOM05D000031 ORTHO05D009544 3.7e-37 158.7 146 58.9
Sed0018870 Sechium edule HOM05D000031 ORTHO05D009544 3.7e-37 158.7 152 55.9
CsaV3_6G008390 Cucumis sativus L. HOM05D000031 ORTHO05D009544 1.8e-36 156.4 158 55.7
Gohir.A12G117600 Gossypium hirsutum HOM05D000031 ORTHO05D009544 1.8e-36 156.4 152 57.2
MD07G1161300 Malus domestica HOM05D000031 ORTHO05D009544 1.8e-36 156.4 132 63.6
Oeu034945.1 Olea europaea HOM05D000031 ORTHO05D009544 1.8e-36 156.4 162 56.8
Gohir.D12G121200 Gossypium hirsutum HOM05D000031 ORTHO05D009544 1.2e-35 153.7 134 61.2
Lj3g0021890 Lotus japonicus HOM05D000031 ORTHO05D009544 1.2e-35 153.7 130 62.3
Atru.chr5.790 Acer truncatum HOM05D000031 ORTHO05D009544 2.0e-35 152.9 148 60.8
ClCG06G002350 Citrullus lanatus HOM05D000031 ORTHO05D009544 2.0e-35 152.9 132 61.4
MELO3C022300.2 Cucumis melo HOM05D000031 ORTHO05D009544 2.7e-35 152.5 160 54.4
RcHm_v2.0_Chr1g0361321 Rosa chinensis HOM05D001071 ORTHO05D009544 2.7e-35 152.5 144 58.3
CSS0005954 Camellia sinensis var. sinensis HOM05D000031 ORTHO05D009544 4.5e-35 151.8 155 58.7
MD01G1091100 Malus domestica HOM05D000031 ORTHO05D009544 5.9e-35 151.4 132 62.1
Gorai.008G132100 Gossypium raimondii HOM05D000031 ORTHO05D009544 7.7e-35 151.0 152 55.9
Aqoxy7G00003 Aquilegia oxysepala HOM05D000031 ORTHO05D009544 1.7e-34 149.8 163 55.2
DCAR_002976 Daucus carota HOM05D000031 ORTHO05D009544 2.3e-34 149.4 134 64.2
Lalb_Chr10g0100931 Lupinus albus HOM05D000031 ORTHO05D009544 6.6e-34 147.9 160 53.8
Psat4g218000 Pisum sativum HOM05D000031 ORTHO05D009544 8.6e-34 147.5 154 53.2
HanXRQChr17g0562181 Helianthus annuus HOM05D000031 ORTHO05D009544 2.5e-33 146.0 159 51.6
Cpa.g.c30749 Carica papaya HOM05D000031 ORTHO05D009544 3.3e-33 145.6 130 62.3
PSO063G1450 Papaver somniferum HOM05D000031 ORTHO05D009544 1.6e-32 143.3 141 52.5
Glyma.03G261900 Glycine max HOM05D000031 ORTHO05D009544 3.6e-32 142.1 146 52.1
Glyma.19G261000 Glycine max HOM05D000031 ORTHO05D009544 8.0e-32 141.0 146 51.4
arahy.Tifrunner.gnm1.ann1.15S87B Arachis hypogaea HOM05D000031 ORTHO05D009544 1.8e-31 139.8 155 53.5
Medtr8g024060 Medicago truncatula HOM05D000031 ORTHO05D009544 1.8e-31 139.8 142 53.5
arahy.Tifrunner.gnm1.ann1.H81X9C Arachis hypogaea HOM05D000031 ORTHO05D009544 2.3e-31 139.4 151 54.3
VMungo1309G3146 Vigna mungo HOM05D000031 ORTHO05D009544 2.3e-31 139.4 130 56.9
Phvul.009G259800 Phaseolus vulgaris HOM05D000031 ORTHO05D009544 1.2e-30 137.1 127 56.7
TPR.G30273 Trifolium pratense HOM05D000031 ORTHO05D009544 1.2e-30 137.1 151 51.7
THA.LOC104827646 Tarenaya hassleriana HOM05D000031 ORTHO05D009544 1.5e-30 136.7 151 52.3
A03p25770 Brassica napus HOM05D000031 ORTHO05D009544 2.6e-30 136.0 148 51.4
BcaB01g03198 Brassica carinata HOM05D000031 ORTHO05D009544 3.4e-30 135.6 148 49.3
Sp4g28870 Schrenkiella parvula HOM05D000031 ORTHO05D009544 3.4e-30 135.6 148 51.4
BcaC01g05056 Brassica carinata HOM05D000031 ORTHO05D009544 4.4e-30 135.2 148 50.7
C03p30710 Brassica napus HOM05D000031 ORTHO05D009544 4.4e-30 135.2 148 50.7
BraA03t11791Z Brassica rapa HOM05D000031 ORTHO05D009544 4.4e-30 135.2 148 50.7
AT2G46850 Arabidopsis thaliana HOM05D000031 ORTHO05D009544 1.3e-29 133.7 146 50.7
CARHR142200 Cardamine hirsuta HOM05D000031 ORTHO05D009544 1.3e-29 133.7 130 54.6
AL4G46310 Arabidopsis lyrata HOM05D000031 ORTHO05D009544 2.9e-29 132.5 146 50.0
Ca_23484_v3 Cicer arietinum L. HOM05D000031 ORTHO05D009544 6.4e-29 131.3 160 49.4
Thhalv10001355m.g Eutrema salsugineum HOM05D000031 ORTHO05D009544 6.4e-29 131.3 128 54.7
PSO782G1618 Papaver somniferum HOM05D000031 ORTHO05D009544 6.4e-29 131.3 141 51.1
Carub.0004s2956 Capsella rubella HOM05D000031 ORTHO05D009544 8.3e-29 131.0 146 50.0
Migut.N01519 Erythranthe guttata HOM05D000031 ORTHO05D009544 1.4e-28 130.2 157 52.9
MBI12_g27879_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D009544 7.0e-28 127.9 130 54.6
VMungo0251G1802 Vigna mungo HOM05D000031 ORTHO05D009544 2.3e-26 122.9 132 53.0
Lalb_Chr17g0343091 Lupinus albus HOM05D000031 ORTHO05D009544 8.0e-24 114.4 113 54.0
Aa31LG1G28230 Aethionema arabicum HOM05D001071 ORTHO05D009544 2.6e-22 109.4 144 44.4
ATR0660G009 Amborella trichopoda HOM05D000031 ORTHO05D009544 7.3e-17 91.3 148 42.6
Os10g0351500 Oryza sativa ssp. japonica HOM05D000031 ORTHO05D009544 1.3e-13 80.5 129 38.0
HPP92_015072 Vanilla planifolia HOM05D000031 ORTHO05D009544 2.4e-12 76.3 151 35.1
Zm00001eb427960 Zea mays HOM05D000031 ORTHO05D009544 2.7e-11 72.8 131 35.9
Ah.13g066190 Amaranthus hybridus HOM05D000031 ORTHO05D009544 6.0e-11 71.6 65 61.5
Actinidia08009 Actinidia chinensis HOM05D001071 ORTHO05D000932 6.6e-10 68.2 45 71.1
SEGI_38450 Sequoiadendron giganteum HOM05D000031 ORTHO05D002276 8.1e-08 61.2 139 33.1
FvH4_7g20830 Fragaria vesca HOM05D000041 ORTHO05D000061 1.2e-06 57.4 132 32.6
FAN06G3609 Fragaria x ananassa HOM05D000041 ORTHO05D000061 1.5e-06 57.0 132 32.6
RcHm_v2.0_Chr1g0365071 Rosa chinensis HOM05D000041 ORTHO05D000061 7.6e-06 54.7 131 32.8


User provided reference genes

Program Settings