Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 6.3e-98 360.9 203 100.0
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 2.5e-78 295.8 212 80.2
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 1.4e-73 280.0 197 80.2
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 4.4e-59 231.9 174 75.3
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 9.9e-59 230.7 144 84.7
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.8e-58 228.8 142 85.9
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 4.8e-53 211.8 179 65.4
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.4e-52 209.5 142 76.1
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 3.4e-51 205.7 163 70.6
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 4.4e-51 205.3 173 64.7
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 1.3e-50 203.8 141 75.9
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 1.3e-50 203.8 141 75.9
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 1.3e-50 203.8 202 59.9
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 1.7e-50 203.4 186 64.0
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 8.4e-50 201.1 182 63.2
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.1e-49 200.7 134 76.9
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.1e-49 200.7 134 75.4
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.1e-49 200.7 163 68.7
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 2.4e-49 199.5 190 61.6
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 2.4e-49 199.5 190 60.5
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 4.2e-49 198.7 190 57.9
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 4.2e-49 198.7 193 62.2
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 7.1e-49 198.0 143 73.4
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 7.1e-49 198.0 142 74.6
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 7.1e-49 198.0 132 77.3
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.2e-48 197.2 165 65.5
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 1.2e-48 197.2 142 74.6
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 2.1e-48 196.4 158 67.1
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 2.1e-48 196.4 141 73.8
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 2.7e-48 196.1 191 59.2
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 2.7e-48 196.1 139 73.4
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 3.5e-48 195.7 173 63.0
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 6.0e-48 194.9 164 65.2
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 7.9e-48 194.5 136 72.8
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 1.3e-47 193.7 163 64.4
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 2.3e-47 193.0 164 65.2
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 6.6e-47 191.4 132 72.0
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 6.6e-47 191.4 162 64.8
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 1.1e-46 190.7 139 73.4
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.9e-46 189.9 141 70.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 2.5e-46 189.5 160 63.8
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 5.6e-46 188.3 136 72.1
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 5.6e-46 188.3 201 54.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 5.6e-46 188.3 137 75.2
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 5.6e-46 188.3 135 71.9
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.3e-45 187.2 186 56.5
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 1.3e-45 187.2 174 60.3
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.3e-45 187.2 146 68.5
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 1.3e-45 187.2 164 61.0
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 2.1e-45 186.4 146 67.8
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 2.8e-45 186.0 160 65.6
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 3.6e-45 185.7 164 63.4
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 1.4e-44 183.7 185 56.2
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.4e-44 183.7 150 66.7
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 1.4e-44 183.7 176 56.2
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 2.4e-44 183.0 131 72.5
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 3.1e-44 182.6 145 67.6
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 3.1e-44 182.6 162 61.1
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 5.3e-44 181.8 132 72.7
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 6.9e-44 181.4 140 67.9
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 9.0e-44 181.0 188 54.8
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 1.2e-43 180.6 134 67.2
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.5e-43 180.3 142 66.9
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 2.6e-43 179.5 193 53.9
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 2.6e-43 179.5 199 52.8
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 4.5e-43 178.7 194 54.6
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 4.5e-43 178.7 194 54.6
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 4.5e-43 178.7 194 54.6
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 5.8e-43 178.3 131 71.0
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 9.9e-43 177.6 132 70.5
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 1.3e-42 177.2 131 67.2
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 2.9e-42 176.0 149 61.7
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 3.8e-42 175.6 145 63.4
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.8e-42 175.6 145 63.4
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 4.9e-42 175.3 207 53.6
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.9e-42 175.3 145 63.4
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 6.4e-42 174.9 132 67.4
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 6.4e-42 174.9 131 68.7
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.4e-42 174.9 171 56.7
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 6.4e-42 174.9 134 67.9
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.4e-41 173.7 184 55.4
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.4e-41 173.7 188 56.9
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.9e-41 173.3 172 52.9
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.4e-41 172.9 138 66.7
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 3.2e-41 172.6 150 58.0
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 4.2e-41 172.2 183 58.5
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.2e-41 172.2 142 63.4
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.2e-41 172.2 145 62.8
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 7.1e-41 171.4 206 50.5
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 9.3e-41 171.0 183 52.5
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-40 170.6 202 51.5
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-40 170.6 150 58.0
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-40 170.6 172 54.1
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-40 170.2 171 53.8
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 2.1e-40 169.9 169 53.8
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 2.7e-40 169.5 150 58.7
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 3.5e-40 169.1 130 68.5
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.8e-39 166.8 137 61.3
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.3e-39 166.4 106 85.8
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.0e-39 166.0 165 58.2
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.5e-38 162.9 145 61.4
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.3e-38 162.2 134 63.4
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 7.4e-38 161.4 150 56.7
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.3e-37 160.6 126 64.3
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.6e-37 160.2 150 56.0
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.1e-36 157.5 134 61.9
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 3.1e-36 156.0 131 61.1
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 6.9e-36 154.8 207 51.2
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 2.0e-35 153.3 158 56.3
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 1.3e-34 150.6 188 48.9
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.5e-33 146.4 180 47.2
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 5.5e-33 145.2 138 56.5
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.5e-32 142.5 185 46.5
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 4.8e-29 132.1 186 46.2
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 2.4e-28 129.8 194 42.8
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-28 129.8 194 42.8
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 2.4e-28 129.8 186 45.7
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 2.4e-28 129.8 194 42.8
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 3.1e-28 129.4 196 43.9
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 3.1e-28 129.4 186 45.7
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 3.1e-28 129.4 186 45.7
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 3.1e-28 129.4 189 41.8
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 4.5e-27 125.6 161 46.0
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 4.5e-27 125.6 161 46.0
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.0e-26 124.4 135 54.1
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.7e-26 123.6 179 48.6
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 2.2e-26 123.2 192 42.7
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 3.8e-26 122.5 162 46.3
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 3.2e-25 119.4 161 44.1
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 5.5e-25 118.6 110 57.3
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 1.2e-24 117.5 115 56.5
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.5e-24 115.9 162 44.4
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.8e-20 103.6 182 43.4
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 3.1e-20 102.8 202 41.6
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.1e-20 102.8 100 61.0
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 6.9e-20 101.7 121 53.7
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.3e-18 97.4 68 72.1
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 1.9e-09 67.0 181 32.6
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 7.2e-09 65.1 69 55.1
FvH4_7g19390 Fragaria vesca HOM05D036880 ORTHO05D006491 8.8e-07 58.2 55 56.4


User provided reference genes

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