Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 2.3e-60 235.3 114 100.0
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 1.1e-35 153.3 77 96.1
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 1.5e-35 152.9 86 86.0
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 7.3e-35 150.6 77 92.2
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 9.5e-35 150.2 77 92.2
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 8.9e-33 143.7 77 88.3
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 2.0e-32 142.5 71 95.8
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 5.8e-32 141.0 79 86.1
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 7.6e-32 140.6 86 81.4
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 8.4e-31 137.1 77 84.4
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 1.4e-30 136.3 77 80.5
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 2.4e-30 135.6 80 78.8
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 3.2e-30 135.2 77 79.2
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 4.1e-30 134.8 78 78.2
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 5.4e-30 134.4 76 82.9
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 5.4e-30 134.4 77 80.5
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 5.4e-30 134.4 77 79.2
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 7.1e-30 134.0 77 79.2
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 1.2e-29 133.3 77 79.2
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 1.6e-29 132.9 76 78.9
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 2.1e-29 132.5 76 80.3
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 2.1e-29 132.5 80 76.2
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 2.1e-29 132.5 77 79.2
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 2.1e-29 132.5 77 77.9
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 2.1e-29 132.5 76 78.9
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 2.1e-29 132.5 80 75.0
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 2.7e-29 132.1 77 79.2
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 2.7e-29 132.1 79 77.2
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 2.7e-29 132.1 77 79.2
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 2.7e-29 132.1 77 77.9
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 2.7e-29 132.1 80 76.2
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 2.7e-29 132.1 76 80.3
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 3.5e-29 131.7 77 77.9
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 3.5e-29 131.7 77 77.9
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 3.5e-29 131.7 77 77.9
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 3.5e-29 131.7 77 75.3
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 3.5e-29 131.7 77 76.6
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 4.6e-29 131.3 77 77.9
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 4.6e-29 131.3 75 81.3
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 6.0e-29 131.0 77 77.9
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 6.0e-29 131.0 77 77.9
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 6.0e-29 131.0 76 78.9
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 6.0e-29 131.0 76 78.9
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 6.0e-29 131.0 76 78.9
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 6.0e-29 131.0 76 78.9
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 6.0e-29 131.0 77 77.9
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 7.8e-29 130.6 80 75.0
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 7.8e-29 130.6 77 77.9
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 7.8e-29 130.6 79 74.7
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 1.0e-28 130.2 76 78.9
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 1.0e-28 130.2 76 78.9
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 1.0e-28 130.2 77 76.6
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 1.0e-28 130.2 76 78.9
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 1.3e-28 129.8 77 76.6
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 1.3e-28 129.8 77 76.6
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 1.3e-28 129.8 77 77.9
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 1.3e-28 129.8 77 76.6
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 1.7e-28 129.4 80 75.0
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 1.7e-28 129.4 77 75.3
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 1.7e-28 129.4 79 75.9
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 1.7e-28 129.4 79 75.9
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 1.7e-28 129.4 77 76.6
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 2.3e-28 129.0 77 75.3
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 2.3e-28 129.0 78 74.4
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 2.3e-28 129.0 78 74.4
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 2.3e-28 129.0 75 78.7
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 2.3e-28 129.0 77 74.0
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 2.3e-28 129.0 77 76.6
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 3.0e-28 128.6 75 78.7
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 3.0e-28 128.6 77 76.6
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 3.0e-28 128.6 77 72.7
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.0e-28 128.6 77 72.7
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.0e-28 128.6 77 72.7
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.0e-28 128.6 77 72.7
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 3.0e-28 128.6 76 77.6
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 3.0e-28 128.6 77 75.3
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 3.9e-28 128.3 77 74.0
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 5.1e-28 127.9 77 74.0
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 6.6e-28 127.5 77 74.0
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 6.6e-28 127.5 77 75.3
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 6.6e-28 127.5 75 77.3
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 8.6e-28 127.1 77 71.4
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.1e-27 126.7 77 71.4
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 1.1e-27 126.7 77 75.3
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 1.1e-27 126.7 76 75.0
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 1.5e-27 126.3 77 76.6
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 1.5e-27 126.3 77 72.7
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 1.5e-27 126.3 77 74.0
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 1.9e-27 125.9 86 69.8
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 1.9e-27 125.9 77 71.4
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.5e-27 125.6 76 75.0
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 2.5e-27 125.6 77 71.4
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 2.5e-27 125.6 77 71.4
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 2.5e-27 125.6 77 74.0
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 4.3e-27 124.8 75 77.3
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 4.3e-27 124.8 77 71.4
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.3e-27 124.8 77 72.7
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.3e-27 124.8 77 72.7
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.3e-27 124.8 77 72.7
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.3e-27 124.8 77 72.7
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 4.3e-27 124.8 77 72.7
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 5.6e-27 124.4 77 71.4
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 7.3e-27 124.0 77 71.4
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 9.6e-27 123.6 75 73.3
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 9.6e-27 123.6 75 73.3
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 9.6e-27 123.6 78 71.8
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 9.6e-27 123.6 77 72.7
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 1.2e-26 123.2 78 73.1
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 1.6e-26 122.9 78 69.2
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 1.6e-26 122.9 75 74.7
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 3.6e-26 121.7 75 73.3
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 6.2e-26 120.9 80 68.8
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 6.2e-26 120.9 76 69.7
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 1.1e-25 120.2 77 71.4
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.4e-25 119.8 76 69.7
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 2.4e-25 119.0 77 68.8
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 3.1e-25 118.6 75 73.3
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 4.0e-25 118.2 77 70.1
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 5.2e-25 117.9 77 67.5
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 6.9e-25 117.5 75 69.3
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 1.2e-24 116.7 76 69.7
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 3.8e-23 111.7 77 64.9
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 8.4e-23 110.5 77 63.6
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 1.6e-21 106.3 77 64.9
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 5.6e-19 97.8 77 54.5
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 4.8e-18 94.7 75 58.7
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 6.2e-18 94.4 75 56.0
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 8.1e-18 94.0 75 57.3
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 5.3e-17 91.3 72 58.3
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 3.4e-16 88.6 49 79.6
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 8.4e-15 84.0 75 50.7
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 1.9e-14 82.8 73 50.7
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 4.6e-13 78.2 77 46.8
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 2.3e-12 75.9 79 44.3
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 6.7e-12 74.3 51 66.7
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 7.4e-11 70.9 69 55.1
Nitab4.5_0000217g0090 Nicotiana tabacum HOM05D005477 ORTHO05D006721 1.2e-08 63.5 40 67.5
MBI15_g35018_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.3e-07 60.1 49 59.2


User provided reference genes

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