Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 5.5e-229 797.3 423 100.0
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 7.3e-189 664.1 436 83.9
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 7.6e-146 521.2 461 69.6
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 8.0e-119 431.4 436 62.8
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 3.9e-118 429.1 417 55.4
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 2.6e-117 426.4 418 57.9
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 2.6e-117 426.4 418 57.4
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 2.2e-116 423.3 412 55.1
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 1.0e-113 414.5 416 53.1
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 1.3e-113 414.1 423 53.9
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 5.0e-113 412.1 419 54.4
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 5.0e-113 412.1 411 54.3
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 2.1e-111 406.8 397 55.2
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 2.3e-110 403.3 414 52.7
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 5.2e-110 402.1 414 53.9
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 7.0e-107 391.7 412 51.5
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 7.0e-107 391.7 418 51.0
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 2.7e-106 389.8 411 51.3
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 3.5e-106 389.4 409 50.4
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 4.5e-106 389.0 407 52.1
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 6.5e-105 385.2 411 50.6
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 3.2e-104 382.9 411 50.6
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 4.2e-104 382.5 412 50.5
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 2.1e-103 380.2 411 50.1
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 2.7e-103 379.8 415 51.3
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.0e-102 377.9 459 47.1
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 1.8e-102 377.1 327 59.0
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 5.2e-102 375.6 410 51.0
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 5.2e-102 375.6 410 51.2
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 2.0e-101 373.6 395 51.4
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 2.0e-101 373.6 412 51.5
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 7.5e-101 371.7 412 49.5
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 9.8e-101 371.3 413 50.6
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.3e-100 370.9 433 48.3
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 1.7e-100 370.5 418 51.4
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 2.8e-100 369.8 422 49.3
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 1.1e-99 367.9 358 54.5
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 4.1e-99 365.9 409 48.2
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 4.1e-99 365.9 414 49.8
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 2.7e-98 363.2 409 48.9
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 1.3e-97 360.9 417 48.9
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.3e-97 360.1 435 46.9
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.9e-96 357.1 438 46.6
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 5.5e-96 355.5 413 48.9
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 1.8e-94 350.5 341 52.5
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 8.9e-94 348.2 411 47.9
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 8.9e-94 348.2 432 47.9
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 2.0e-93 347.1 428 50.7
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 3.1e-91 339.7 481 43.0
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 5.4e-91 339.0 393 48.9
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 1.6e-90 337.4 499 41.9
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 2.7e-90 336.7 409 46.7
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 2.7e-90 336.7 423 46.8
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 3.8e-89 332.8 415 48.0
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 1.9e-88 330.5 424 47.9
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 1.4e-86 324.3 361 50.4
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 1.8e-86 323.9 414 44.0
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 2.3e-86 323.6 417 42.2
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 2.3e-86 323.6 417 42.2
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 5.2e-86 322.4 436 43.8
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 2.6e-85 320.1 417 41.7
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 3.4e-85 319.7 412 43.9
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 7.5e-85 318.5 392 45.4
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 9.8e-85 318.2 426 42.0
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 9.8e-85 318.2 209 80.9
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 2.9e-84 316.6 418 42.8
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 5.4e-83 312.4 410 44.9
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 5.4e-83 312.4 192 85.4
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 1.2e-82 311.2 418 42.3
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 1.7e-81 307.4 418 41.6
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 1.1e-80 304.7 354 48.0
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 5.6e-80 302.4 306 52.3
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 1.2e-79 301.2 443 40.9
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 1.6e-79 300.8 450 39.1
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 6.2e-79 298.9 409 42.8
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 6.2e-79 298.9 375 45.9
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 4.0e-78 296.2 420 43.1
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 4.0e-78 296.2 393 48.1
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 2.6e-77 293.5 412 41.7
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 5.8e-77 292.4 422 39.8
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 2.9e-76 290.0 301 51.2
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 4.1e-75 286.2 354 46.0
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 2.7e-74 283.5 418 38.3
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 2.7e-74 283.5 438 39.3
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 6.0e-74 282.3 429 38.9
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 1.0e-73 281.6 414 38.9
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 3.3e-72 276.6 190 76.8
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 1.6e-71 274.2 347 45.0
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 3.6e-71 273.1 367 42.8
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.8e-70 270.8 370 44.3
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.8e-70 270.8 370 44.3
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 1.3e-68 264.6 356 43.5
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 2.7e-66 256.9 464 35.3
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 2.3e-65 253.8 192 79.2
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 3.6e-63 246.5 175 75.4
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.1e-56 224.9 300 42.3
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 2.8e-55 220.3 413 35.4
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 6.2e-55 219.2 413 34.9
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 6.4e-52 209.1 199 54.8
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 1.4e-51 208.0 412 33.3
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 1.4e-38 164.9 246 41.1
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 8.4e-36 155.6 130 60.8
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 6.1e-26 122.9 83 71.1
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 6.1e-26 122.9 83 71.1
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.4e-19 101.7 176 38.1
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 1.9e-19 101.3 116 48.3
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 5.5e-19 99.8 181 34.8
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 1.8e-17 94.7 139 43.9
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 2.5e-16 90.9 347 23.6
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 2.3e-09 67.8 99 43.4
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 4.4e-08 63.5 86 43.0
Mapoly0056s0109 Marchantia polymorpha HOM05D007038 ORTHO05D008893 4.8e-07 60.1 240 20.8


User provided reference genes

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