Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400011154 Solanum tuberosum HOM05D008438 ORTHO05D008827 1.4e-30 135.6 64 100.0
Solyc07g005980.2 Solanum lycopersicum HOM05D022295 ORTHO05D008827 5.6e-24 113.6 64 81.2
Sopen07g002110 Solanum pennellii HOM05D022295 ORTHO05D008827 5.6e-24 113.6 64 81.2
Nitab4.5_0006744g0030 Nicotiana tabacum HOM05D022295 ORTHO05D008827 9.8e-21 102.8 64 71.9
Nitab4.5_0001036g0130 Nicotiana tabacum HOM05D022295 ORTHO05D008827 3.2e-19 97.8 64 68.8
Peaxi162Scf00563g00416 Petunia axillaris HOM05D022295 ORTHO05D008827 4.1e-19 97.4 51 82.4
Cfa020785 Carpinus fangiana HOM05D019529 ORTHO05D008827 2.0e-10 68.6 45 55.6
QL02p094192 Quercus lobata HOM05D019529 ORTHO05D008827 2.3e-09 65.1 57 50.9
Rhsim03G0259300 Rhododendron simsii HOM05D008438 ORTHO05D008827 2.3e-09 65.1 54 59.3
Actinidia38661 Actinidia chinensis HOM05D008438 ORTHO05D008827 3.9e-09 64.3 45 62.2
HanXRQChr05g0131701 Helianthus annuus HOM05D019090 ORTHO05D008827 6.6e-09 63.5 58 50.0
Dinv42819 Davidia involucrata HOM05D019090 ORTHO05D008827 1.5e-08 62.4 45 57.8
Dinv43281 Davidia involucrata HOM05D019090 ORTHO05D008827 1.5e-08 62.4 45 57.8
Haze_19141 Corylus avellana HOM05D019529 ORTHO05D008827 3.3e-08 61.2 45 48.9
COL.COLO4_05403 Corchorus olitorius HOM05D019525 ORTHO05D008827 4.3e-08 60.8 53 56.6
HanXRQChr05g0141581 Helianthus annuus HOM05D019090 ORTHO05D008827 4.3e-08 60.8 42 59.5
Rhsim12G0185500 Rhododendron simsii HOM05D017379 ORTHO05D008827 4.3e-08 60.8 39 61.5
AUR62028379 Chenopodium quinoa HOM05D030418 ORTHO05D008827 7.3e-08 60.1 51 54.9
Sabra06G0137500 Salix brachista HOM05D037217 ORTHO05D008827 7.3e-08 60.1 44 50.0
VMungo1080G1089 Vigna mungo HOM05D022716 ORTHO05D008827 1.6e-07 58.9 38 63.2
ClCG09G003500 Citrullus lanatus HOM05D008438 ORTHO05D008827 2.8e-07 58.2 38 55.3
AUR62025372 Chenopodium quinoa HOM05D030418 ORTHO05D008827 3.6e-07 57.8 51 52.9
PSO782G4356 Papaver somniferum HOM05D008438 ORTHO05D008827 3.6e-07 57.8 39 51.3
TAR625G0030 Trochodendron aralioides HOM05D008438 ORTHO05D008827 3.6e-07 57.8 40 57.5
HanXRQChr02g0033611 Helianthus annuus HOM05D008438 ORTHO05D008827 4.7e-07 57.4 39 56.4
HanXRQChr04g0100031 Helianthus annuus HOM05D008438 ORTHO05D008827 4.7e-07 57.4 42 52.4
MELO3C023487.2 Cucumis melo HOM05D008438 ORTHO05D008827 6.2e-07 57.0 40 52.5
CsaV3_7G031700 Cucumis sativus L. HOM05D008438 ORTHO05D008827 6.2e-07 57.0 40 52.5
PSO063G1826 Papaver somniferum HOM05D008438 ORTHO05D008827 6.2e-07 57.0 39 51.3
AUR62032995 Chenopodium quinoa HOM05D032589 ORTHO05D008827 8.1e-07 56.6 40 55.0
Cc04_g05290 Coffea canephora HOM05D008438 ORTHO05D008827 8.1e-07 56.6 39 56.4
ECA247G0974 Erigeron canadensis HOM05D008438 ORTHO05D008827 8.1e-07 56.6 39 53.8
Aqoxy7G03345 Aquilegia oxysepala HOM05D008438 ORTHO05D008827 1.1e-06 56.2 39 53.8
Eucgr.F03984 Eucalyptus grandis HOM05D008438 ORTHO05D008827 1.1e-06 56.2 39 51.3
Actinidia08936 Actinidia chinensis HOM05D017379 ORTHO05D008827 1.4e-06 55.8 39 53.8
Lsat_1_v5_gn_4_132640 Lactuca sativa HOM05D008438 ORTHO05D008827 1.4e-06 55.8 39 51.3
Lj3g0015243 Lotus japonicus HOM05D022716 ORTHO05D008827 1.4e-06 55.8 40 52.5
GSVIVG01016106001 Vitis vinifera HOM05D008438 ORTHO05D008827 1.4e-06 55.8 39 53.8
CAN.G1008.6 Capsicum annuum HOM05D008438 ORTHO05D008827 1.8e-06 55.5 40 55.0
Duzib168G1121 Durio zibethinus HOM05D019525 ORTHO05D008827 1.8e-06 55.5 51 49.0
Duzib235G0641 Durio zibethinus HOM05D032892 ORTHO05D008827 1.8e-06 55.5 41 48.8
Glyma.15G002400 Glycine max HOM05D022716 ORTHO05D008827 1.8e-06 55.5 40 52.5
Hma1.2p1_1914F.1_g307390 Hydrangea macrophylla HOM05D008438 ORTHO05D008827 1.8e-06 55.5 39 53.8
Peaxi162Scf00314g01044 Petunia axillaris HOM05D008438 ORTHO05D008827 1.8e-06 55.5 40 55.0
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.8e-06 55.5 39 53.8
Thecc.09G153900 Theobroma cacao HOM05D019525 ORTHO05D008827 1.8e-06 55.5 37 56.8
Ciclev10026162m.g Citrus clementina HOM05D008438 ORTHO05D008827 2.3e-06 55.1 39 51.3
COL.COLO4_26771 Corchorus olitorius HOM05D032892 ORTHO05D008827 2.3e-06 55.1 39 46.2
Glyma.13G371300 Glycine max HOM05D022716 ORTHO05D008827 2.3e-06 55.1 40 52.5
Potri.006G180600 Populus trichocarpa HOM05D037217 ORTHO05D008827 2.3e-06 55.1 43 46.5
Sed0012806 Sechium edule HOM05D008438 ORTHO05D008827 2.3e-06 55.1 40 52.5
TWI32G0905 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 3.1e-06 54.7 51 45.1
Oeu004554.3 Olea europaea HOM05D008438 ORTHO05D008827 4.0e-06 54.3 39 51.3
unitig_52.g17481 Utricularia gibba HOM05D008438 ORTHO05D008827 4.0e-06 54.3 38 52.6
Nitab4.5_0004738g0100 Nicotiana tabacum HOM05D008438 ORTHO05D008827 5.2e-06 53.9 40 55.0
Sabra18G0088400 Salix brachista HOM05D037217 ORTHO05D008827 5.2e-06 53.9 43 48.8
PGSC0003DMG400014154 Solanum tuberosum HOM05D008438 ORTHO05D008827 5.2e-06 53.9 39 48.7
TWI34G1835 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 5.2e-06 53.9 48 47.9
MD17G1226300 Malus domestica HOM05D015689 ORTHO05D008827 6.8e-06 53.5 38 52.6
QL02p094184 Quercus lobata HOM05D019529 ORTHO05D008827 6.8e-06 53.5 46 54.3
Solyc03g117660.4 Solanum lycopersicum HOM05D008438 ORTHO05D008827 6.8e-06 53.5 39 48.7
Sopen03g036570 Solanum pennellii HOM05D008438 ORTHO05D008827 6.8e-06 53.5 39 48.7
Potri.009G120000 Populus trichocarpa HOM05D001507 ORTHO05D002108 8.9e-06 53.1 35 60.0
Prupe.3G103500 Prunus persica HOM05D015689 ORTHO05D008827 8.9e-06 53.1 38 55.3
RcHm_v2.0_Chr2g0132351 Rosa chinensis HOM05D015689 ORTHO05D008827 8.9e-06 53.1 38 52.6


User provided reference genes

Program Settings