Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010997 Solanum tuberosum HOM05D002961 ORTHO05D003426 1.3e-23 112.1 51 100.0
Nitab4.5_0000071g0200 Nicotiana tabacum HOM05D002961 ORTHO05D003426 5.4e-22 106.7 51 92.2
Nitab4.5_0007307g0010 Nicotiana tabacum HOM05D002961 ORTHO05D003426 5.4e-22 106.7 51 92.2
Solyc10g084640.1 Solanum lycopersicum HOM05D002961 ORTHO05D003426 5.4e-22 106.7 48 95.8
Sopen10g034080 Solanum pennellii HOM05D002961 ORTHO05D003426 5.4e-22 106.7 48 95.8
BcaC01g05491 Brassica carinata HOM05D002961 ORTHO05D003426 1.2e-21 105.5 51 90.2
C03p25890 Brassica napus HOM05D002961 ORTHO05D003426 1.2e-21 105.5 51 90.2
BolC3t14973H Brassica oleracea HOM05D002961 ORTHO05D003426 1.2e-21 105.5 51 90.2
CAN.G688.8 Capsicum annuum HOM05D002961 ORTHO05D003426 1.2e-21 105.5 51 88.2
AL4G36330 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 4.6e-21 103.6 51 88.2
AL92U10030 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 4.6e-21 103.6 51 88.2
AT2G39020 Arabidopsis thaliana HOM05D002961 ORTHO05D003426 4.6e-21 103.6 51 88.2
BcaB01g03642 Brassica carinata HOM05D002961 ORTHO05D003426 4.6e-21 103.6 51 88.2
THA.LOC104825225 Tarenaya hassleriana HOM05D002961 ORTHO05D003426 4.6e-21 103.6 51 86.3
Hma1.2p1_0366F.1_g136890 Hydrangea macrophylla HOM05D002961 ORTHO05D003426 7.8e-21 102.8 51 86.3
THA.LOC104826902 Tarenaya hassleriana HOM05D002961 ORTHO05D003426 7.8e-21 102.8 51 84.3
Carub.0004s2107 Capsella rubella HOM05D002961 ORTHO05D003426 1.0e-20 102.4 51 86.3
Oeu031329.1 Olea europaea HOM05D002961 ORTHO05D003426 1.3e-20 102.1 51 86.3
Sp4g21380 Schrenkiella parvula HOM05D002961 ORTHO05D003426 2.3e-20 101.3 51 86.3
Thhalv10017189m.g Eutrema salsugineum HOM05D002961 ORTHO05D003426 3.9e-20 100.5 51 86.3
Peaxi162Scf01227g00007 Petunia axillaris HOM05D002961 ORTHO05D003426 3.9e-20 100.5 48 87.5
MSTRG.9164 Avicennia marina HOM05D002961 ORTHO05D003426 5.1e-20 100.1 51 80.4
CSS0000191 Camellia sinensis var. sinensis HOM05D002961 ORTHO05D003426 5.1e-20 100.1 47 89.4
CANSAT56G0472 Cannabis sativa HOM05D002961 ORTHO05D003426 5.1e-20 100.1 47 89.4
CARHR133810 Cardamine hirsuta HOM05D002961 ORTHO05D003426 6.6e-20 99.8 51 84.3
Migut.F01970 Erythranthe guttata HOM05D002961 ORTHO05D003426 6.6e-20 99.8 51 80.4
Dinv00190 Davidia involucrata HOM05D002961 ORTHO05D003426 8.6e-20 99.4 47 87.2
QL08p055207 Quercus lobata HOM05D002961 ORTHO05D003426 8.6e-20 99.4 47 87.2
QL08p055257 Quercus lobata HOM05D002961 ORTHO05D003426 8.6e-20 99.4 47 87.2
SGA_v2.0_scaffold62G21403 Striga asiatica HOM05D002961 ORTHO05D003426 8.6e-20 99.4 51 82.4
Actinidia22443 Actinidia chinensis HOM05D002961 ORTHO05D003426 1.1e-19 99.0 46 91.3
A03p21820 Brassica napus HOM05D002961 ORTHO05D003426 1.1e-19 99.0 51 84.3
BraA03t11418Z Brassica rapa HOM05D002961 ORTHO05D003426 1.1e-19 99.0 51 84.3
Ciclev10032618m.g Citrus clementina HOM05D002961 ORTHO05D003426 1.1e-19 99.0 51 80.4
Cc02_g11190 Coffea canephora HOM05D002961 ORTHO05D003426 1.1e-19 99.0 51 80.4
FAN03G0700 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.5e-19 98.6 45 93.3
FAN10G0478 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.5e-19 98.6 45 93.3
FAN10G1125 Fragaria x ananassa HOM05D002961 ORTHO05D003426 1.5e-19 98.6 45 93.3
Cfa001671 Carpinus fangiana HOM05D002961 ORTHO05D003426 1.9e-19 98.2 47 85.1
MD01G1105800 Malus domestica HOM05D002961 ORTHO05D003426 1.9e-19 98.2 47 87.2
Thecc.10G077100 Theobroma cacao HOM05D002961 ORTHO05D003426 1.9e-19 98.2 51 76.5
FAN01G0092 Fragaria x ananassa HOM05D002961 ORTHO05D003426 3.3e-19 97.4 45 91.1
Gohir.D05G296200 Gossypium hirsutum HOM05D002961 ORTHO05D003426 3.3e-19 97.4 51 78.4
Gorai.009G313000 Gossypium raimondii HOM05D002961 ORTHO05D003426 3.3e-19 97.4 51 78.4
unitig_749.g13572 Utricularia gibba HOM05D002961 ORTHO05D003426 3.3e-19 97.4 48 83.3
Aqoxy1G01189 Aquilegia oxysepala HOM05D002961 ORTHO05D003426 4.3e-19 97.1 47 85.1
HanXRQChr12g0368721 Helianthus annuus HOM05D002961 ORTHO05D003426 4.3e-19 97.1 46 89.1
RcHm_v2.0_Chr1g0362951 Rosa chinensis HOM05D002961 ORTHO05D003426 4.3e-19 97.1 45 91.1
COL.COLO4_12162 Corchorus olitorius HOM05D002961 ORTHO05D003426 5.6e-19 96.7 51 78.4
FvH4_7g19050 Fragaria vesca HOM05D002961 ORTHO05D003426 5.6e-19 96.7 45 91.1
FAN06G3681 Fragaria x ananassa HOM05D002961 ORTHO05D003426 5.6e-19 96.7 45 91.1
FAN06G4372 Fragaria x ananassa HOM05D002961 ORTHO05D003426 5.6e-19 96.7 45 91.1
Gohir.A05G296300 Gossypium hirsutum HOM05D002961 ORTHO05D003426 5.6e-19 96.7 51 78.4
Lsat_1_v5_gn_8_20401 Lactuca sativa HOM05D002961 ORTHO05D003426 5.6e-19 96.7 46 89.1
PGR142G2276 Punica granatum HOM05D002961 ORTHO05D003426 5.6e-19 96.7 49 79.6
Haze_16863 Corylus avellana HOM05D002961 ORTHO05D003426 7.3e-19 96.3 47 83.0
QL08p055272 Quercus lobata HOM05D002961 ORTHO05D003426 1.2e-18 95.5 47 83.0
Sp4g03890 Schrenkiella parvula HOM05D002961 ORTHO05D003426 1.2e-18 95.5 51 78.4
CiPaw.01G271000 Carya illinoinensis HOM05D002961 ORTHO05D003426 2.1e-18 94.7 47 80.9
Lj3P882T56 Lonicera japonica HOM05D002961 ORTHO05D003426 2.8e-18 94.4 48 79.2
Rhsim03G0118600 Rhododendron simsii HOM05D002961 ORTHO05D003426 2.8e-18 94.4 48 79.2
ECA233G3034 Erigeron canadensis HOM05D002961 ORTHO05D003426 3.6e-18 94.0 47 80.9
Atru.chr12.812 Acer truncatum HOM05D002961 ORTHO05D003426 4.7e-18 93.6 47 83.0
Duzib106G0956 Durio zibethinus HOM05D002961 ORTHO05D003426 4.7e-18 93.6 51 74.5
PSO339G6169 Papaver somniferum HOM05D002961 ORTHO05D003426 6.2e-18 93.2 49 77.6
ClCG05G021100 Citrullus lanatus HOM05D002961 ORTHO05D003426 1.1e-17 92.4 49 75.5
Lalb_Chr19g0129101 Lupinus albus HOM05D002961 ORTHO05D003426 1.1e-17 92.4 45 82.2
Manes.07G097400 Manihot esculenta HOM05D002961 ORTHO05D003426 1.1e-17 92.4 45 84.4
SalBow6G2357 Salvia bowleyana HOM05D002961 ORTHO05D003426 1.1e-17 92.4 51 74.5
Lj6g0009968 Lotus japonicus HOM05D002961 ORTHO05D003426 1.4e-17 92.0 45 84.4
Sed0014207 Sechium edule HOM05D002961 ORTHO05D003426 1.4e-17 92.0 49 75.5
RcHm_v2.0_Chr4g0438191 Rosa chinensis HOM05D002961 ORTHO05D003426 1.8e-17 91.7 45 86.7
Sc09g0006170 Simmondsia chinensis HOM05D002961 ORTHO05D003426 2.4e-17 91.3 49 73.5
TPR.G13797 Trifolium pratense HOM05D002961 ORTHO05D003426 2.4e-17 91.3 45 82.2
AT2G39030 Arabidopsis thaliana HOM05D002961 ORTHO05D003426 3.1e-17 90.9 51 72.5
MSTRG.9163 Avicennia marina HOM05D002961 ORTHO05D003426 3.1e-17 90.9 48 77.1
Nn2g13743 Nelumbo nucifera HOM05D002961 ORTHO05D003426 3.1e-17 90.9 45 80.0
PSO063G7402 Papaver somniferum HOM05D002961 ORTHO05D003426 3.1e-17 90.9 42 88.1
Phvul.007G239400 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 3.1e-17 90.9 45 82.2
Medtr1g049370 Medicago truncatula HOM05D002961 ORTHO05D003426 4.0e-17 90.5 45 82.2
Potri.008G037700 Populus trichocarpa HOM05D002961 ORTHO05D003426 4.0e-17 90.5 45 82.2
TAR633G0023 Trochodendron aralioides HOM05D002961 ORTHO05D003426 4.0e-17 90.5 45 84.4
Hma1.2p1_0366F.1_g136880 Hydrangea macrophylla HOM05D002961 ORTHO05D003426 5.2e-17 90.1 49 79.6
SEGI_09913 Sequoiadendron giganteum HOM05D002961 ORTHO05D003426 5.2e-17 90.1 45 80.0
CSS0004023 Camellia sinensis var. sinensis HOM05D002961 ORTHO05D003426 6.8e-17 89.7 45 82.2
Manes.10G048200 Manihot esculenta HOM05D002961 ORTHO05D003426 6.8e-17 89.7 45 80.0
Potri.010G224800 Populus trichocarpa HOM05D002961 ORTHO05D003426 6.8e-17 89.7 45 80.0
VMungo0720G2309 Vigna mungo HOM05D002961 ORTHO05D003426 6.8e-17 89.7 45 82.2
CANSAT35G1379 Cannabis sativa HOM05D002961 ORTHO05D003426 8.9e-17 89.4 49 79.6
Psat6g129400 Pisum sativum HOM05D002961 ORTHO05D003426 8.9e-17 89.4 45 80.0
AL4G36340 Arabidopsis lyrata HOM05D002961 ORTHO05D003426 1.2e-16 89.0 51 70.6
Glyma.10G109000 Glycine max HOM05D002961 ORTHO05D003426 1.2e-16 89.0 45 80.0
Sabra10G0173800 Salix brachista HOM05D002961 ORTHO05D003426 1.2e-16 89.0 49 73.5
VMungo1383G2373 Vigna mungo HOM05D002961 ORTHO05D003426 2.0e-16 88.2 45 80.0
Carub.0004s2106 Capsella rubella HOM05D002961 ORTHO05D003426 2.6e-16 87.8 44 86.4
Cpa.g.sc53.95 Carica papaya HOM05D002961 ORTHO05D003426 2.6e-16 87.8 51 72.5
Lj5g0009305 Lotus japonicus HOM05D002961 ORTHO05D003426 2.6e-16 87.8 44 84.1
Aa31LG5G20660 Aethionema arabicum HOM05D002961 ORTHO05D003426 4.4e-16 87.0 45 80.0
ATR0680G063 Amborella trichopoda HOM05D002961 ORTHO05D003426 4.4e-16 87.0 45 75.6
Potri.008G037600 Populus trichocarpa HOM05D002961 ORTHO05D003426 4.4e-16 87.0 49 73.5
TAR636G2919 Trochodendron aralioides HOM05D002961 ORTHO05D003426 4.4e-16 87.0 47 76.6
Carub.0004s2109 Capsella rubella HOM05D002961 ORTHO05D003426 5.8e-16 86.7 51 68.6
CDE02G3576 Ceratophyllum demersum HOM05D002961 ORTHO05D003426 9.9e-16 85.9 47 68.1
DCAR_006425 Daucus carota HOM05D002961 ORTHO05D003426 9.9e-16 85.9 47 72.3
CsaV3_5G036170 Cucumis sativus L. HOM05D002961 ORTHO05D003426 1.3e-15 85.5 47 72.3
Sabra08G0025400 Salix brachista HOM05D002961 ORTHO05D003426 1.3e-15 85.5 49 69.4
Atru.chr12.813 Acer truncatum HOM05D002961 ORTHO05D003426 1.7e-15 85.1 39 89.7
DCAR_006426 Daucus carota HOM05D002961 ORTHO05D003426 1.7e-15 85.1 45 73.3
TWI38G1556 Tripterygium wilfordii HOM05D002961 ORTHO05D003426 1.7e-15 85.1 45 75.6
EL10Ac2g02683 Beta vulgaris HOM05D002961 ORTHO05D003426 2.2e-15 84.7 49 65.3
Phvul.007G239500 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 2.2e-15 84.7 45 77.8
Ca_03078_v3 Cicer arietinum L. HOM05D002961 ORTHO05D003426 2.9e-15 84.3 45 71.1
SHI08927 Sapria himalayana HOM05D002961 ORTHO05D003426 4.9e-15 83.6 45 75.6
MELO3C012417.2 Cucumis melo HOM05D002961 ORTHO05D003426 6.4e-15 83.2 47 70.2
AUR62030580 Chenopodium quinoa HOM05D002961 ORTHO05D003426 8.4e-15 82.8 49 65.3
Glyma.02G156700 Glycine max HOM05D002961 ORTHO05D003426 1.1e-14 82.4 45 73.3
SMO116G0049 Selaginella moellendorffii HOM05D002961 ORTHO05D003426 1.9e-14 81.6 44 75.0
ATR1149G016 Amborella trichopoda HOM05D002961 ORTHO05D003426 2.4e-14 81.3 45 68.9
Mapoly0179s0017 Marchantia polymorpha HOM05D002961 ORTHO05D003426 4.2e-14 80.5 45 75.6
PSO407G0084 Papaver somniferum HOM05D002961 ORTHO05D003426 4.2e-14 80.5 45 73.3
Pp3c5_21790 Physcomitrium patens HOM05D002961 ORTHO05D003426 5.4e-14 80.1 43 76.7
AagrBONN_evm.TU.Sc2ySwM_228.2872 Anthoceros agrestis HOM05D002961 ORTHO05D003426 1.2e-13 79.0 45 71.1
HPP92_018616 Vanilla planifolia HOM05D002961 ORTHO05D003426 1.2e-13 79.0 46 67.4
Carub.0007s3340 Capsella rubella HOM05D002961 ORTHO05D003426 4.6e-13 77.0 51 68.6
Manes.07G085800 Manihot esculenta HOM05D002961 ORTHO05D003426 4.6e-13 77.0 45 68.9
Cpa.g.c31528 Carica papaya HOM05D002961 ORTHO05D003426 6.0e-13 76.6 51 62.7
Manes.07G097500 Manihot esculenta HOM05D002961 ORTHO05D003426 6.0e-13 76.6 45 71.1
Cfa001668 Carpinus fangiana HOM05D002961 ORTHO05D003426 1.7e-12 75.1 49 63.3
MELO3C012419.2 Cucumis melo HOM05D002961 ORTHO05D003426 3.0e-12 74.3 47 66.0
VMungo0720G2456 Vigna mungo HOM05D002961 ORTHO05D003426 3.9e-12 73.9 44 70.5
Os03g0151600 Oryza sativa ssp. japonica HOM05D002961 ORTHO05D003426 5.1e-12 73.6 45 64.4
TWI63G1345 Tripterygium wilfordii HOM05D002961 ORTHO05D003426 1.1e-11 72.4 39 74.4
Sed0016707 Sechium edule HOM05D002961 ORTHO05D003426 1.5e-11 72.0 49 63.3
GSVIVG01016243001 Vitis vinifera HOM05D002961 ORTHO05D003426 2.5e-11 71.2 49 55.1
Zm00001eb403080 Zea mays HOM05D002961 ORTHO05D003426 2.5e-11 71.2 45 62.2
Zm00001eb004140 Zea mays HOM05D002961 ORTHO05D003426 3.3e-11 70.9 45 62.2
Cc02_g11200 Coffea canephora HOM05D002961 ORTHO05D003426 4.3e-11 70.5 42 66.7
Lalb_Chr01g0010461 Lupinus albus HOM05D002961 ORTHO05D003426 4.3e-11 70.5 45 68.9
CBR_g18695 Chara braunii HOM05D002961 ORTHO05D003426 7.3e-11 69.7 46 58.7
CsaV3_5G036190 Cucumis sativus L. HOM05D002961 ORTHO05D003426 7.3e-11 69.7 49 63.3
Phvul.007G240100 Phaseolus vulgaris HOM05D002961 ORTHO05D003426 7.3e-11 69.7 47 59.6
SalBow4G0587 Salvia bowleyana HOM05D002961 ORTHO05D003426 7.3e-11 69.7 46 65.2
PSO210G6097 Papaver somniferum HOM05D002961 ORTHO05D003426 1.3e-10 68.9 46 63.0
CsaV3_5G036180 Cucumis sativus L. HOM05D002961 ORTHO05D003426 1.6e-10 68.6 43 72.1
AUR62022924 Chenopodium quinoa HOM05D002961 ORTHO05D003426 2.1e-10 68.2 49 49.0
SalBow4G2042 Salvia bowleyana HOM05D002961 ORTHO05D003426 2.1e-10 68.2 45 64.4
CAN.G1609.10 Capsicum annuum HOM05D002961 ORTHO05D000001 4.8e-10 67.0 47 57.4
MELO3C012418.2 Cucumis melo HOM05D002961 ORTHO05D003426 6.2e-10 66.6 43 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2558 Anthoceros agrestis HOM05D002961 ORTHO05D003426 8.1e-10 66.2 37 70.3
PSO729G0216 Papaver somniferum HOM05D002961 ORTHO05D003426 1.4e-09 65.5 46 58.7
Mapoly0139s0013 Marchantia polymorpha HOM05D002961 ORTHO05D003426 2.4e-09 64.7 46 58.7
PSO210G3713 Papaver somniferum HOM05D002961 ORTHO05D003426 2.4e-09 64.7 46 56.5
Peaxi162Scf00523g00056 Petunia axillaris HOM05D002961 ORTHO05D003426 2.4e-09 64.7 45 57.8
Solyc08g068280.2 Solanum lycopersicum HOM05D002961 ORTHO05D003426 6.9e-09 63.2 45 55.6
Nitab4.5_0003338g0090 Nicotiana tabacum HOM05D002961 ORTHO05D003426 1.2e-08 62.4 46 54.3
PGSC0003DMG400014499 Solanum tuberosum HOM05D002961 ORTHO05D003426 1.2e-08 62.4 45 55.6
EL10Ac2g04865 Beta vulgaris HOM05D002961 ORTHO05D003426 2.0e-08 61.6 45 53.3
EL10Ac2g04869 Beta vulgaris HOM05D002961 ORTHO05D003426 2.0e-08 61.6 45 53.3
Nitab4.5_0000052g0120 Nicotiana tabacum HOM05D002961 ORTHO05D003426 2.0e-08 61.6 48 45.8
Dinv36421 Davidia involucrata HOM05D002961 ORTHO05D003426 2.6e-08 61.2 27 96.3
EL10Ac2g04876 Beta vulgaris HOM05D002961 ORTHO05D003426 3.4e-08 60.8 42 54.8
AUR62012284 Chenopodium quinoa HOM05D002961 ORTHO05D003426 7.6e-08 59.7 49 40.8
HPP92_008436 Vanilla planifolia HOM05D002961 ORTHO05D003426 9.9e-08 59.3 46 56.5
HPP92_018617 Vanilla planifolia HOM05D002961 ORTHO05D003426 9.9e-08 59.3 43 55.8
Sed0001125 Sechium edule HOM05D002961 ORTHO05D003426 1.7e-07 58.5 49 57.1
Sc09g0006150 Simmondsia chinensis HOM05D002961 ORTHO05D003426 3.8e-07 57.4 45 53.3
Sed0004049 Sechium edule HOM05D002961 ORTHO05D003426 6.4e-07 56.6 47 51.1
Sopen08g002710 Solanum pennellii HOM05D002961 ORTHO05D003426 8.4e-07 56.2 46 52.2
PGSC0003DMG400010832 Solanum tuberosum HOM05D002961 ORTHO05D003426 1.1e-06 55.8 45 51.1
PGSC0003DMG400037933 Solanum tuberosum HOM05D002961 ORTHO05D003426 1.1e-06 55.8 45 51.1
Nitab4.5_0000838g0150 Nicotiana tabacum HOM05D002961 ORTHO05D003426 1.4e-06 55.5 45 46.7
Solyc08g006765.1 Solanum lycopersicum HOM05D002961 ORTHO05D003426 1.4e-06 55.5 46 52.2
SEGI_06691 Sequoiadendron giganteum HOM05D002961 ORTHO05D003426 1.9e-06 55.1 30 70.0
Nitab4.5_0010499g0020 Nicotiana tabacum HOM05D002961 ORTHO05D003426 4.2e-06 53.9 47 48.9
Nitab4.5_0003338g0070 Nicotiana tabacum HOM05D002961 ORTHO05D003426 7.1e-06 53.1 40 50.0
Sed0008789 Sechium edule HOM05D002961 ORTHO05D003426 9.3e-06 52.8 47 46.8


User provided reference genes

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