Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.1e-125 453.0 346 100.0
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-85 320.9 291 66.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.8e-84 315.1 291 64.9
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.9e-71 272.7 315 54.9
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.3e-66 257.7 292 59.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.1e-65 252.7 157 84.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.3e-62 242.7 295 56.3
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 9.5e-62 241.5 291 57.4
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.1e-61 240.4 296 55.1
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 2.6e-59 233.4 164 73.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.6e-59 233.4 169 77.5
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.6e-59 231.9 166 77.7
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 2.4e-57 226.9 310 53.5
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 4.2e-57 226.1 294 48.3
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.6e-56 224.2 303 45.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 8.7e-55 218.4 159 69.8
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 8.7e-55 218.4 159 74.2
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.1e-54 218.0 169 66.9
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.9e-54 217.2 159 73.6
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 4.3e-54 216.1 161 67.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 4.3e-54 216.1 164 67.7
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.2e-53 214.5 169 65.1
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.1e-53 213.8 159 69.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.7e-53 212.6 305 45.2
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.7e-53 212.6 305 45.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.7e-53 212.6 165 67.9
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.4e-52 210.3 158 69.0
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 3.1e-52 209.9 165 64.8
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.1e-52 209.9 167 66.5
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 5.3e-52 209.1 166 65.1
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 6.9e-52 208.8 166 63.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 6.9e-52 208.8 152 71.1
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 9.0e-52 208.4 158 67.7
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 2.0e-51 207.2 301 48.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.0e-51 207.2 158 67.1
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.6e-51 206.8 164 61.6
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.4e-51 206.5 158 66.5
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.4e-51 206.5 158 66.5
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.4e-51 206.1 158 67.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.4e-51 206.1 167 64.7
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 7.6e-51 205.3 166 63.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-50 204.5 158 67.7
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.3e-50 204.5 157 68.2
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.7e-50 204.1 166 63.9
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.7e-50 204.1 166 63.9
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.2e-50 203.8 166 66.9
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.2e-50 203.8 160 65.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.9e-50 203.4 156 68.6
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.8e-50 203.0 158 65.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 4.9e-50 202.6 158 67.1
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.4e-49 201.1 165 63.0
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.4e-49 200.3 166 62.0
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 3.2e-49 199.9 166 63.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 4.2e-49 199.5 170 60.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 5.4e-49 199.1 155 65.8
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 7.1e-49 198.7 157 67.5
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 7.1e-49 198.7 152 68.4
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 9.3e-49 198.4 162 61.7
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.3e-49 198.4 161 63.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.3e-49 198.4 164 62.8
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.2e-48 198.0 164 61.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.6e-48 197.6 165 61.2
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.6e-48 197.6 157 67.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.6e-48 197.6 156 64.1
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.6e-48 197.6 156 64.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.7e-48 196.8 164 61.0
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.5e-48 196.4 164 61.6
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 3.5e-48 196.4 164 61.0
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.6e-48 196.1 166 60.8
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 6.0e-48 195.7 161 60.9
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.8e-48 195.3 162 61.1
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 7.8e-48 195.3 162 61.1
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.0e-47 194.9 164 60.4
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.0e-47 194.9 161 65.2
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.0e-47 194.9 160 65.0
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.3e-47 193.7 157 61.8
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.3e-47 193.7 161 64.0
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.3e-47 193.7 161 64.0
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.0e-47 193.4 175 60.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.9e-47 193.0 153 64.7
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 8.7e-47 191.8 162 59.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.1e-46 191.4 159 62.9
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-46 191.0 145 67.6
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.5e-46 191.0 161 60.2
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.9e-46 190.7 161 66.5
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.5e-46 190.3 163 62.6
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.3e-46 189.5 161 62.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.3e-46 189.5 159 62.9
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.3e-46 189.5 160 61.2
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.6e-46 189.1 160 61.9
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.3e-46 188.7 164 61.6
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.3e-46 188.7 160 61.9
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.3e-45 188.0 167 56.9
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.6e-45 187.6 161 62.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.8e-45 186.8 167 57.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 2.8e-45 186.8 172 61.0
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.8e-45 186.8 157 63.1
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 6.2e-45 185.7 167 56.9
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.2e-45 185.7 171 57.3
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 8.1e-45 185.3 170 62.4
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.4e-44 183.7 161 62.7
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.0e-44 183.0 154 61.0
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 4.0e-44 183.0 166 57.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 6.9e-44 182.2 157 63.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 5.8e-43 179.1 156 61.5
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.6e-40 171.0 158 60.8
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.7e-40 170.2 156 53.8
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.6e-40 169.5 165 51.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-38 164.9 164 51.2
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 4.3e-38 162.9 152 55.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.6e-37 161.0 152 53.9
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 4.8e-37 159.5 152 55.3
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.1e-36 158.3 152 53.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.2e-35 154.8 138 55.8
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 2.6e-35 153.7 148 58.1
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 3.4e-35 153.3 148 57.4
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.2e-34 150.6 156 53.2
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.2e-33 146.4 141 56.0
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.6e-32 144.4 154 54.5
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.1e-32 144.1 137 54.7
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.5e-32 143.3 145 51.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.0e-31 141.7 169 47.9
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.3e-31 140.6 159 49.1
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 6.7e-31 139.0 162 46.9
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-30 137.9 156 46.8
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.3e-29 134.8 94 55.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.8e-29 132.9 102 57.8
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.8e-28 131.0 159 43.4
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.1e-28 130.2 146 50.0
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.3e-28 129.4 164 41.5
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-27 128.3 164 42.7
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.1e-25 121.7 153 43.1
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.3e-25 118.6 92 52.2
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 7.9e-24 115.5 78 57.7
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.3e-23 114.0 62 77.4
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 2.3e-23 114.0 80 53.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.7e-23 112.5 133 51.9
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.5e-22 111.3 127 49.6
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.7e-22 109.4 133 51.1
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.6e-21 107.8 155 39.4
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.1e-20 105.1 86 52.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.4e-20 104.8 123 43.1
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.4e-20 104.0 84 48.8
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.9e-20 102.4 88 47.7
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 7.7e-19 99.0 133 48.9
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-18 98.2 88 45.5
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.1e-17 95.1 89 48.3
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 5.5e-17 92.8 120 50.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.6e-16 91.3 157 37.6
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.3e-15 87.4 111 52.3
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.1e-14 85.1 45 77.8
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.5e-14 84.7 110 50.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-12 78.6 117 43.6
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 7.7e-11 72.4 45 60.0
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.0e-10 72.0 97 47.4


User provided reference genes

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