Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 1.2e-101 373.2 196 100.0
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 3.4e-96 355.1 196 92.9
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 2.4e-94 349.0 198 93.9
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 2.0e-93 345.9 197 93.4
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 5.0e-92 341.3 197 89.3
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 5.0e-76 288.1 202 76.2
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 8.6e-76 287.3 202 75.7
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 2.0e-64 249.6 162 79.0
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 1.5e-59 233.4 194 63.9
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 7.3e-59 231.1 142 84.5
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 3.6e-58 228.8 190 67.4
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 6.8e-57 224.6 186 64.5
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 1.1e-54 217.2 191 63.4
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 4.2e-54 215.3 188 64.9
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 6.0e-53 211.5 168 65.5
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 1.0e-52 210.7 172 65.7
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 1.9e-51 206.5 174 62.6
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 7.3e-51 204.5 174 65.5
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 2.1e-50 203.0 169 60.9
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 2.8e-50 202.6 160 69.4
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 2.8e-50 202.6 181 59.7
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 4.7e-50 201.8 179 59.8
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 3.1e-49 199.1 171 60.2
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 6.9e-49 198.0 175 63.4
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 8.4e-47 191.0 174 59.8
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 8.4e-47 191.0 172 57.0
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 1.4e-46 190.3 161 65.2
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 2.1e-45 186.4 204 53.4
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 2.7e-45 186.0 177 55.4
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 1.0e-44 184.1 168 58.9
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 1.0e-44 184.1 177 56.5
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 1.3e-44 183.7 171 55.6
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 3.0e-44 182.6 166 57.8
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 3.0e-44 182.6 172 57.6
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 5.1e-44 181.8 160 58.1
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 5.1e-44 181.8 169 55.6
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 8.7e-44 181.0 171 54.4
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 1.5e-43 180.3 172 57.0
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 1.9e-43 179.9 115 79.1
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 1.9e-43 179.9 166 58.4
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 2.5e-43 179.5 166 54.8
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 4.3e-43 178.7 172 57.0
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 2.8e-42 176.0 165 59.4
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 3.6e-42 175.6 163 54.0
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 4.8e-42 175.3 165 56.4
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 8.1e-42 174.5 169 53.3
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 8.1e-42 174.5 165 55.2
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.4e-41 173.7 166 57.8
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 3.1e-41 172.6 166 57.2
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 3.1e-41 172.6 160 55.0
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 5.3e-41 171.8 165 55.2
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 6.9e-41 171.4 160 54.4
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 9.0e-41 171.0 163 53.4
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 1.5e-40 170.2 169 54.4
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 3.8e-39 165.6 160 53.8
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 4.9e-39 165.2 171 50.9
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 1.9e-38 163.3 168 50.6
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 7.1e-38 161.4 202 47.5
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 4.6e-37 158.7 186 48.4
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 3.0e-36 156.0 154 52.6
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 7.4e-35 151.4 177 44.1
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 2.1e-34 149.8 174 48.3
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 2.1e-34 149.8 155 45.2
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 3.7e-34 149.1 173 48.6
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 4.8e-34 148.7 167 49.7
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 4.8e-34 148.7 157 51.6
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 6.2e-34 148.3 161 46.0
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 1.8e-33 146.7 161 48.4
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 3.1e-33 146.0 162 48.1
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 6.9e-33 144.8 167 49.1
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 1.2e-32 144.1 163 49.1
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 1.5e-32 143.7 108 65.7
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 5.8e-32 141.7 158 49.4
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 9.9e-32 141.0 165 47.3
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 1.3e-31 140.6 158 48.7
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 1.3e-31 140.6 158 48.7
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 2.2e-31 139.8 160 52.5
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 2.9e-31 139.4 160 48.8
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 3.8e-31 139.0 165 46.7
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 3.8e-31 139.0 165 46.7
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 4.9e-31 138.7 158 48.1
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 1.1e-30 137.5 158 48.1
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 3.2e-30 136.0 151 46.4
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 3.2e-30 136.0 158 48.1
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 4.2e-30 135.6 158 46.8
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 4.2e-30 135.6 117 66.7
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 4.2e-30 135.6 153 45.1
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 7.1e-30 134.8 158 45.6
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 3.5e-29 132.5 134 50.7
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 6.0e-29 131.7 153 45.1
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 7.9e-29 131.3 165 44.8
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 3.9e-28 129.0 153 44.4
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 3.3e-27 125.9 157 43.3
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 2.3e-20 103.2 97 52.6
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 1.1e-17 94.4 103 44.7
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 9.0e-17 91.3 93 52.7
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 2.0e-16 90.1 110 47.3
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 3.4e-16 89.4 132 34.1
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 1.4e-14 84.0 111 41.4
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 1.9e-14 83.6 69 59.4
Actinidia07176 Actinidia chinensis HOM05D007495 ORTHO05D009552 1.8e-12 77.0 49 75.5
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 1.0e-07 61.2 44 59.1


User provided reference genes

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