Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 7.1e-195 683.7 337 100.0
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 1.3e-193 679.5 337 99.1
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 6.6e-193 677.2 337 98.8
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 9.6e-176 620.2 344 89.5
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 4.8e-175 617.8 346 88.4
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.1e-152 543.5 346 79.8
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 1.5e-152 543.1 353 78.8
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 2.0e-152 542.7 317 85.8
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 4.8e-151 538.1 341 78.6
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 4.1e-150 535.0 348 77.0
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 6.9e-150 534.3 338 79.9
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 2.0e-149 532.7 347 76.4
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 2.1e-146 522.7 338 78.1
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 4.7e-146 521.5 342 78.4
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 7.9e-146 520.8 350 73.4
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.9e-145 518.5 342 75.1
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 5.1e-145 518.1 348 75.6
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.1e-142 510.4 356 72.5
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 2.0e-141 506.1 373 70.2
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 3.5e-141 505.4 343 72.0
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 4.5e-141 505.0 345 72.8
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.0e-140 503.8 358 71.5
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 5.0e-140 501.5 351 71.2
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 6.5e-140 501.1 358 70.9
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 1.1e-139 500.4 349 70.8
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 2.5e-139 499.2 342 73.4
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 3.2e-139 498.8 358 71.2
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.2e-138 496.9 349 70.2
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 4.7e-138 495.0 349 70.5
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 1.8e-137 493.0 359 70.8
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.0e-137 492.3 352 69.0
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.2e-137 491.5 352 69.0
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.5e-136 490.0 352 70.2
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 2.0e-136 489.6 360 71.1
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 2.6e-136 489.2 365 68.5
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 3.3e-136 488.8 353 69.4
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.3e-136 488.8 353 69.4
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 3.3e-136 488.8 362 70.2
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 3.3e-136 488.8 355 69.6
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 5.7e-136 488.0 348 69.8
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 5.7e-136 488.0 367 67.0
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 7.4e-136 487.6 353 70.5
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 1.3e-135 486.9 350 70.3
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 1.7e-135 486.5 353 70.3
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.7e-135 486.5 351 71.5
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 3.7e-135 485.3 352 69.0
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.8e-135 485.0 348 69.5
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 6.3e-135 484.6 348 69.8
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 8.2e-135 484.2 344 73.0
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 1.4e-134 483.4 352 69.0
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.4e-134 482.6 354 68.9
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 4.1e-134 481.9 355 68.5
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 5.3e-134 481.5 356 68.3
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 1.6e-133 479.9 351 70.1
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.6e-133 479.9 348 70.1
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 2.0e-133 479.6 359 68.0
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 2.0e-133 479.6 354 69.5
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 2.6e-133 479.2 358 67.9
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 2.6e-133 479.2 363 69.4
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 3.5e-133 478.8 351 70.7
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 4.5e-133 478.4 356 67.7
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 4.5e-133 478.4 348 68.4
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 1.3e-132 476.9 357 68.1
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.2e-132 476.1 321 74.8
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 2.2e-132 476.1 356 67.1
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.9e-132 475.7 353 68.8
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 6.5e-132 474.6 356 67.1
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 6.5e-132 474.6 363 67.5
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 8.5e-132 474.2 357 67.8
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 8.5e-132 474.2 357 67.8
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 8.5e-132 474.2 362 68.5
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 8.5e-132 474.2 362 68.5
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 1.5e-131 473.4 363 67.2
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 2.5e-131 472.6 357 66.9
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 2.5e-131 472.6 356 67.4
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 2.5e-131 472.6 359 68.2
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 2.5e-131 472.6 361 68.1
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 4.2e-131 471.9 349 66.8
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 7.2e-131 471.1 353 69.4
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 9.4e-131 470.7 363 67.5
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 1.6e-130 469.9 376 67.6
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 1.6e-130 469.9 376 67.6
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 6.1e-130 468.0 351 68.4
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 2.0e-128 463.0 359 65.7
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 5.7e-128 461.5 351 67.2
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 2.2e-127 459.5 374 64.7
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 2.2e-127 459.5 342 67.3
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 6.3e-127 458.0 348 67.5
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.4e-126 456.8 352 66.8
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.0e-124 450.7 353 65.2
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 3.8e-124 448.7 351 66.1
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 5.0e-124 448.4 360 64.7
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 8.5e-124 447.6 436 57.1
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 1.8e-121 439.9 357 64.4
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 4.0e-121 438.7 360 63.6
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 6.8e-121 438.0 358 63.7
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 5.7e-120 434.9 347 62.5
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 2.4e-118 429.5 347 62.0
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 3.1e-118 429.1 332 67.5
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 6.6e-116 421.4 322 68.9
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 8.6e-116 421.0 332 65.1
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.5e-115 420.2 362 61.9
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 2.5e-115 419.5 344 62.8
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 7.2e-115 417.9 325 66.8
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 9.8e-112 407.5 349 59.0
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 2.0e-109 399.8 342 59.6
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.5e-107 393.7 296 66.2
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.5e-107 392.9 350 58.3
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.6e-106 389.0 299 63.2
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 1.9e-102 376.7 281 69.8
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.2e-101 374.0 320 61.9
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 7.8e-101 371.3 284 68.0
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 1.1e-99 367.5 287 68.3
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.2e-98 364.0 228 78.5
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 2.8e-98 362.8 348 57.2
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 2.8e-98 362.8 194 88.7
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 2.3e-97 359.8 194 88.1
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 4.4e-96 355.5 346 55.2
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 7.5e-96 354.8 350 55.4
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 9.8e-96 354.4 194 87.1
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 3.7e-95 352.4 334 56.3
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 1.1e-94 350.9 296 59.1
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 2.7e-93 346.3 313 58.1
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.7e-92 343.6 328 54.0
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 4.7e-90 335.5 295 55.3
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.4e-70 270.8 153 82.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.1e-62 244.6 202 62.9
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 1.6e-61 240.7 200 62.5
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.5e-59 234.2 126 84.9
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 2.6e-56 223.4 175 68.6
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.6e-45 187.6 332 40.1
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 1.9e-43 180.6 100 83.0
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.9e-36 156.4 153 56.2
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.1e-33 148.3 138 58.0
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 9.1e-33 145.2 101 76.2
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 1.2e-29 134.8 88 72.7
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 3.9e-28 129.8 154 50.0
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 4.4e-27 126.3 73 76.7
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 7.4e-27 125.6 73 76.7
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 2.4e-25 120.6 227 39.6
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 6.5e-15 85.9 118 39.8
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 2.7e-13 80.5 43 83.7
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 6.5e-07 59.3 71 50.7


User provided reference genes

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