Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 4.3e-198 694.5 361 100.0
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.1e-190 669.8 361 97.0
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 5.6e-190 667.5 361 96.4
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.1e-172 608.2 362 87.6
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.3e-170 603.2 362 86.7
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.2e-168 596.7 376 83.8
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.0e-159 567.0 364 82.4
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 7.7e-147 524.2 358 77.1
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.6e-144 515.4 360 76.1
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 6.7e-143 511.1 358 74.0
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.2e-141 506.1 354 75.7
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 7.7e-139 497.7 362 70.2
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 5.0e-138 495.0 359 73.3
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.6e-136 490.0 338 74.3
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.7e-136 489.2 367 72.2
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 3.6e-136 488.8 366 70.2
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 6.1e-136 488.0 345 73.3
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.8e-135 486.5 365 69.6
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 3.0e-135 485.7 361 71.5
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 2.0e-134 483.0 370 70.3
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 9.8e-134 480.7 367 70.6
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.3e-133 480.3 341 74.5
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 3.7e-133 478.8 358 69.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 4.8e-133 478.4 369 70.5
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 4.8e-133 478.4 359 70.8
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 6.3e-133 478.0 362 71.3
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 8.3e-133 477.6 342 72.8
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.8e-132 476.5 326 73.9
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.4e-132 476.1 354 70.9
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.4e-132 476.1 354 70.9
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 2.4e-132 476.1 354 70.9
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 3.1e-132 475.7 333 72.7
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 3.1e-132 475.7 335 75.2
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 5.4e-132 474.9 314 78.3
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 9.1e-132 474.2 353 70.0
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.2e-131 473.8 370 68.9
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.6e-131 473.4 354 70.9
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.6e-131 473.4 358 70.7
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 2.0e-131 473.0 367 68.9
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 2.7e-131 472.6 367 68.7
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.5e-131 472.2 334 72.8
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 3.5e-131 472.2 333 73.0
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 4.5e-131 471.9 366 69.1
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 5.9e-131 471.5 359 71.0
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 5.9e-131 471.5 369 68.3
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.3e-130 470.3 336 71.7
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.2e-130 469.5 352 71.9
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.9e-130 469.2 366 68.3
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 5.0e-130 468.4 320 74.1
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 6.5e-130 468.0 329 75.4
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 3.2e-129 465.7 340 71.8
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 4.2e-129 465.3 365 68.5
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 4.2e-129 465.3 367 68.9
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 7.2e-129 464.5 366 68.9
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 7.2e-129 464.5 367 68.1
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.6e-128 463.4 367 67.8
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 3.6e-128 462.2 351 70.1
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.0e-127 460.7 361 68.7
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.4e-127 460.3 352 71.0
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.8e-127 459.9 355 69.3
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.3e-127 459.5 386 65.5
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 2.3e-127 459.5 361 68.1
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 2.3e-127 459.5 359 68.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 3.0e-127 459.1 360 66.9
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 3.0e-127 459.1 376 66.5
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 4.0e-127 458.8 386 65.5
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.2e-127 458.4 337 71.2
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 6.8e-127 458.0 361 67.6
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 7.5e-126 454.5 386 65.3
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.2e-125 453.0 353 66.6
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.2e-125 453.0 321 72.6
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 6.3e-125 451.4 364 67.3
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 6.3e-125 451.4 355 68.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 8.3e-125 451.1 358 66.5
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 1.1e-124 450.7 363 66.7
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 1.4e-124 450.3 371 67.1
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 2.4e-124 449.5 358 69.3
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 3.1e-124 449.1 366 69.1
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.0e-123 446.4 328 72.6
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 4.5e-123 445.3 360 67.5
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 5.9e-123 444.9 381 65.1
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 7.7e-123 444.5 363 64.2
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.3e-122 443.7 364 67.3
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 2.9e-122 442.6 364 67.3
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 2.9e-122 442.6 355 67.0
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 8.6e-122 441.0 359 65.7
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.1e-121 440.7 359 64.9
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.1e-121 440.7 345 67.2
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 4.3e-121 438.7 357 65.5
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 4.3e-121 438.7 346 66.2
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 1.6e-120 436.8 361 65.1
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.6e-120 436.8 283 78.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.6e-120 436.8 347 68.0
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 4.7e-120 435.3 361 64.8
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 1.4e-119 433.7 311 71.1
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 3.0e-119 432.6 353 64.3
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.6e-118 429.5 352 65.3
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 2.6e-118 429.5 348 65.8
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 4.4e-118 428.7 360 63.3
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 6.4e-117 424.9 309 70.6
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 6.4e-117 424.9 360 64.2
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 8.3e-117 424.5 323 69.3
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.1e-116 424.1 374 62.6
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.4e-116 423.7 330 70.3
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 9.2e-116 421.0 353 64.6
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.6e-115 420.2 353 63.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 4.6e-115 418.7 354 64.7
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 4.6e-115 418.7 354 64.7
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 4.6e-115 418.7 354 64.7
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.0e-114 417.5 353 64.0
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 2.3e-114 416.4 353 62.9
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 3.0e-114 416.0 354 64.4
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.9e-114 415.6 364 63.2
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.9e-114 415.6 356 64.6
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.1e-113 414.1 326 66.9
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 7.3e-113 411.4 352 63.4
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 9.5e-113 411.0 349 63.0
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 9.5e-113 411.0 349 63.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 9.5e-113 411.0 354 59.6
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.2e-112 410.6 350 63.4
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.2e-112 410.6 336 66.4
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.6e-112 410.2 352 58.8
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.6e-112 409.1 356 63.8
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 3.6e-112 409.1 349 62.8
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 8.0e-112 407.9 349 62.5
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.1e-111 406.0 356 62.6
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.3e-109 400.6 352 58.0
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.4e-108 396.4 333 64.6
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.2e-107 394.0 283 72.8
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.2e-104 384.0 346 54.9
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 4.7e-104 382.1 382 57.3
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.2e-102 377.5 350 58.3
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 3.0e-98 362.8 359 58.2
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.2e-96 357.5 467 49.3
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.1e-95 354.4 266 67.7
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.9e-90 335.9 322 60.9
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.2e-88 330.9 274 64.6
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 8.9e-87 324.7 324 52.2
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 4.4e-86 322.4 256 64.1
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.4e-84 317.4 339 50.4
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 6.0e-83 312.0 227 73.6
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.3e-82 310.1 358 48.0
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.5e-81 307.4 229 71.2
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.6e-81 305.4 299 53.5
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 4.9e-77 292.4 195 74.9
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 4.9e-77 292.4 365 46.8
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 2.7e-75 286.6 277 56.3
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 7.9e-75 285.0 205 71.7
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.6e-72 277.3 219 68.9
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.3e-71 272.3 228 64.0
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 3.4e-70 269.6 218 67.4
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 3.3e-65 253.1 277 46.6
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.4e-47 193.7 172 60.5
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.1e-44 184.9 132 72.0
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.8e-40 170.2 137 66.4
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.8e-40 170.2 108 87.0
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 6.9e-39 165.6 135 65.9
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 4.5e-38 162.9 161 55.9
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.2e-30 138.3 87 73.6
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 7.2e-28 129.0 92 68.5
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.4e-23 114.8 270 28.5
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.7e-16 91.3 261 26.4
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 4.5e-06 56.6 37 73.0


User provided reference genes

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