Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 2258.4 1211 100.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 2158.6 1239 93.1
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 2145.2 1239 91.8
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1939.5 1260 83.2
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1764.6 1237 79.0
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1725.3 1242 76.9
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1490.3 1242 66.9
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1470.7 1225 66.8
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1464.1 1230 65.4
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1454.1 1223 65.5
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1452.2 1228 65.9
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1444.1 1247 64.5
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1443.7 1257 65.7
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1439.1 1249 63.8
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1434.1 1250 65.0
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1414.1 1229 63.2
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1408.3 1242 65.4
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1390.9 1217 63.5
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1383.6 1234 61.3
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1381.3 1251 61.4
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1371.7 1282 58.8
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1369.4 1218 60.8
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1365.1 1246 59.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1364.0 1248 59.9
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1360.1 1244 61.4
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1355.9 1277 60.1
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1355.5 1246 59.6
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1348.2 1317 59.3
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1346.3 1204 61.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1346.3 1260 60.3
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1345.5 1271 61.3
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1343.2 1259 60.4
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1340.1 1230 62.7
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1335.9 1182 61.4
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1335.1 1259 58.9
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1332.8 1210 61.0
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1330.9 1242 59.3
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1330.1 1170 62.6
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1327.0 1220 59.0
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1325.1 1246 57.7
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1323.9 1176 62.2
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1320.8 1300 57.2
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1320.1 1250 58.9
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1319.7 1245 59.0
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1318.5 1257 59.7
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1317.0 1194 61.1
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1316.2 1233 59.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1315.8 1188 61.8
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1315.4 1235 59.2
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1314.3 1222 61.5
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1314.3 1238 58.0
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1313.1 1244 58.8
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1308.9 1245 59.6
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1307.7 1228 60.9
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1306.2 1229 60.2
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1304.7 1209 59.8
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1304.7 1209 59.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1302.3 1202 59.0
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1302.0 1245 58.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1298.5 1177 58.4
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1297.3 1248 57.5
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1297.0 1247 58.9
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1293.9 1212 59.9
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1291.9 1235 58.8
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1291.9 1248 56.7
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1291.6 1232 58.6
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1291.2 1239 57.6
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1290.4 1273 58.4
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1289.6 1208 58.5
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1289.2 1229 57.2
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1288.5 1251 59.3
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1285.8 1241 57.5
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1282.7 1215 58.4
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1263.1 1237 57.9
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1262.7 1247 55.4
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1251.5 1236 58.7
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1245.0 1182 57.9
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1234.2 1245 56.4
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1218.8 1246 56.3
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1217.6 1208 57.8
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1201.4 1257 54.3
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1201.0 1232 56.4
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1191.8 1272 54.0
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1189.5 1187 56.9
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1183.7 1186 56.7
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1176.4 1263 54.3
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1172.1 1265 54.5
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1166.8 1220 55.2
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1161.7 1184 56.5
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1161.7 1184 56.5
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1160.6 1208 55.3
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1157.9 1189 55.9
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1138.3 1205 54.1
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1136.3 1276 50.5
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1131.7 1243 52.8
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1119.4 1165 54.6
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1114.8 1068 57.9
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1099.0 1219 53.1
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1088.2 1276 51.1
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 3.1e-293 1012.3 943 61.8
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 5.0e-291 1005.0 755 70.5
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 4.7e-289 998.4 1303 45.5
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.0e-287 993.0 1076 54.6
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 1.3e-283 980.3 1217 47.2
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 2.3e-280 969.5 1236 45.2
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.6e-273 946.8 1263 44.2
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 2.7e-260 902.9 1225 45.1
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.7e-254 883.6 1241 43.2
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.1e-237 827.8 661 66.6
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 7.9e-212 741.9 1228 41.4
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 7.6e-199 698.7 1094 40.3
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.7e-174 617.8 429 72.0
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.3e-150 538.5 786 46.6
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.8e-140 504.2 532 57.1
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.0e-138 498.0 1201 33.0
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.5e-133 481.1 672 49.1
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 5.8e-130 469.9 1245 31.7
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.9e-128 464.9 608 45.1
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.6e-127 461.8 1279 30.7
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 2.1e-127 461.5 1263 31.0
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 3.0e-126 457.6 1275 32.2
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.7e-121 441.8 463 54.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.2e-116 425.6 441 57.4
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.4e-115 422.2 1127 30.1
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 2.3e-86 325.1 1297 27.1
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.5e-74 285.8 1029 28.8
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.4e-70 272.7 264 56.4
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 6.3e-68 263.8 481 36.2
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 8.2e-68 263.5 516 34.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.3e-65 256.1 1028 27.4
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 5.7e-61 240.7 217 62.7
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 5.7e-53 214.2 277 46.2
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.8e-46 190.3 351 37.3
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.2e-37 163.3 128 69.5
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.4e-28 131.0 121 61.2
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.1e-27 130.2 473 26.6
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.7e-26 125.6 191 45.0
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.0e-25 123.6 92 65.2
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 3.3e-24 118.6 841 23.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 6.4e-20 104.4 184 38.0
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.1e-19 103.6 127 48.8
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.6e-18 99.8 140 39.3
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.9e-16 92.8 73 64.4
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 9.5e-16 90.5 61 70.5
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 3.6e-15 88.6 112 50.0
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.7e-15 88.2 71 53.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 5.8e-13 81.3 53 71.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 5.8e-13 81.3 53 71.7
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.3e-12 80.1 84 47.6
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 7.8e-10 70.9 89 50.6
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.2e-07 63.5 67 46.3
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 2.8e-07 62.4 49 63.3
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.1e-06 60.5 67 46.3


User provided reference genes

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