Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 5.4e-209 730.7 361 100.0
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 4.2e-201 704.5 359 96.1
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 7.1e-201 703.7 359 96.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 4.8e-173 611.3 361 86.4
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 8.2e-173 610.5 360 86.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.2e-169 598.2 361 85.3
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.1e-153 547.0 368 79.6
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.4e-92 344.0 364 53.8
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 1.9e-92 343.6 376 52.4
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 9.2e-92 341.3 370 53.5
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 4.6e-91 339.0 365 53.4
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.3e-90 337.4 359 51.8
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 3.0e-90 336.3 372 54.0
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.9e-89 333.6 360 51.4
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 4.3e-89 332.4 361 53.2
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.2e-88 330.9 368 52.2
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.8e-87 327.0 378 51.9
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.8e-87 327.0 368 51.9
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.1e-84 317.8 384 50.0
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 3.2e-84 316.2 353 51.3
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.2e-84 315.8 383 50.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 5.4e-84 315.5 384 49.7
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 7.1e-84 315.1 370 51.4
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 7.1e-84 315.1 370 51.4
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 9.3e-84 314.7 379 49.1
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 9.3e-84 314.7 387 48.6
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.2e-83 314.3 350 51.1
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-83 313.9 385 49.9
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 2.3e-82 310.1 369 48.2
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 3.9e-82 309.3 380 49.7
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.9e-81 307.0 376 50.3
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.5e-81 306.6 384 49.2
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.3e-80 304.3 392 48.0
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 8.1e-80 301.6 379 48.5
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 8.1e-80 301.6 364 51.1
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.8e-79 300.4 365 49.6
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.8e-79 300.4 383 48.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.8e-79 300.4 375 49.9
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 3.1e-79 299.7 379 49.6
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 4.0e-79 299.3 364 49.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 5.3e-79 298.9 374 48.7
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 9.0e-79 298.1 365 49.3
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.2e-78 297.7 347 51.9
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 7.6e-78 295.0 362 50.3
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 3.8e-77 292.7 363 48.2
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 4.9e-77 292.4 373 48.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 3.2e-76 289.7 381 47.5
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 4.2e-76 289.3 333 51.1
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.1e-75 287.0 381 46.5
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.7e-75 286.6 369 47.4
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 7.9e-75 285.0 372 46.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.0e-74 284.6 367 48.0
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.0e-74 284.6 365 47.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.3e-74 284.3 354 48.0
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.1e-73 281.2 383 46.0
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.4e-71 274.2 374 45.7
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 5.3e-71 272.3 382 46.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 5.3e-71 272.3 349 49.0
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.2e-70 271.2 359 46.8
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.0e-70 270.4 358 46.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 5.8e-70 268.9 364 45.6
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 9.9e-70 268.1 373 45.3
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.4e-68 264.2 355 45.4
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.9e-68 263.8 378 45.0
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 3.2e-68 263.1 359 45.7
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.0e-66 258.1 358 44.7
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.1e-65 254.6 382 41.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.9e-65 253.8 358 44.7
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 5.6e-65 252.3 373 44.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 7.4e-65 251.9 392 42.1
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.6e-64 250.8 380 44.5
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.6e-64 250.8 364 45.1
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 3.7e-64 249.6 365 44.4
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 4.8e-64 249.2 352 44.6
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 6.2e-64 248.8 387 42.6
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.4e-63 247.7 348 44.8
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.8e-63 247.3 361 44.9
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 4.0e-63 246.1 349 45.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 6.9e-63 245.4 362 44.5
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.9e-63 245.4 370 43.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 9.0e-63 245.0 364 45.1
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 3.4e-62 243.0 351 46.2
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 4.5e-62 242.7 356 43.8
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 4.5e-62 242.7 350 44.6
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.8e-62 242.3 363 44.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 5.8e-62 242.3 339 45.1
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 5.8e-62 242.3 446 39.5
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-61 240.7 363 44.4
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.2e-61 240.4 359 45.7
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.9e-61 240.0 437 40.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 4.6e-59 232.6 379 42.0
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 7.9e-59 231.9 368 42.7
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 6.7e-58 228.8 423 39.7
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 2.5e-57 226.9 394 41.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.6e-56 224.2 334 43.7
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 6.3e-56 222.2 373 40.5
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.3e-56 222.2 356 42.1
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.4e-55 220.3 363 43.0
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 3.1e-55 219.9 202 55.0
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.1e-52 211.5 263 47.5
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 7.9e-51 205.3 362 39.8
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 7.9e-51 205.3 334 41.3
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.3e-50 204.5 244 48.8
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.8e-50 204.1 243 48.6
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.9e-49 200.7 357 40.6
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.4e-47 194.5 364 38.5
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 3.1e-47 193.4 341 42.5
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.7e-45 187.6 364 39.8
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 2.9e-45 186.8 198 54.0
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 6.5e-45 185.7 365 38.4
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.6e-43 181.0 200 50.5
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 7.9e-43 178.7 294 42.2
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 3.0e-42 176.8 194 49.0
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 5.1e-42 176.0 203 51.2
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 1.3e-40 171.4 358 36.3
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 3.7e-40 169.9 364 36.5
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 5.3e-39 166.0 365 37.3
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.5e-38 164.5 197 49.7
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.5e-38 164.5 362 34.8
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 7.7e-38 162.2 358 38.0
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 9.4e-36 155.2 280 39.6
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.2e-35 154.8 355 34.6
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.6e-35 154.5 125 59.2
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 2.6e-33 147.1 195 49.2
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 4.7e-27 126.3 123 59.3
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.8e-23 114.4 230 38.7
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.3e-21 108.2 107 57.9
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.5e-20 102.8 150 40.0
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 9.4e-20 102.1 150 39.3
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.2e-17 95.1 91 57.1
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.5e-17 94.7 349 31.8
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.9e-12 77.8 348 26.1
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.9e-12 77.8 139 38.1
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.2e-12 75.9 165 32.1
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.4e-10 71.6 166 32.5
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 6.8e-10 69.3 169 29.6
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.2e-09 68.6 86 45.3
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.8e-08 63.9 165 27.9
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 8.3e-08 62.4 163 30.1
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 8.3e-08 62.4 163 30.1
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 8.3e-08 62.4 163 30.1
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 8.3e-08 62.4 163 30.1
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 8.3e-08 62.4 163 30.1
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.8e-07 61.2 163 28.8
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 7.0e-07 59.3 68 48.5
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 5.9e-06 56.2 140 28.6


User provided reference genes

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