Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010583 Solanum tuberosum HOM05D002813 ORTHO05D003203 5.6e-83 310.8 152 100.0
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 5.9e-56 221.1 110 95.5
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 5.0e-55 218.0 109 95.4
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 7.9e-53 210.7 110 90.0
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 2.3e-52 209.1 108 91.7
CAN.G400.3 Capsicum annuum HOM05D002813 ORTHO05D003203 1.7e-47 193.0 110 86.4
CAN.G953.3 Capsicum annuum HOM05D002813 ORTHO05D003203 8.0e-37 157.5 100 80.0
Dinv27902 Davidia involucrata HOM05D002813 ORTHO05D003203 6.5e-31 137.9 110 56.4
MSTRG.9106 Avicennia marina HOM05D002813 ORTHO05D003203 2.7e-29 132.5 111 55.9
Peaxi162Scf00227g00722 Petunia axillaris HOM05D002813 ORTHO05D003203 6.1e-29 131.3 71 90.1
Cc08_g09560 Coffea canephora HOM05D002813 ORTHO05D003203 2.0e-27 126.3 109 55.0
QL12p041358 Quercus lobata HOM05D002813 ORTHO05D003203 1.4e-25 120.2 101 52.5
GSVIVG01035624001 Vitis vinifera HOM05D002813 ORTHO05D003203 4.1e-25 118.6 108 52.8
Potri.006G238300 Populus trichocarpa HOM05D002813 ORTHO05D003203 3.5e-24 115.5 113 48.7
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 2.2e-23 112.8 101 48.5
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 2.2e-23 112.8 101 51.5
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 5.0e-23 111.7 110 44.5
TAR626G1934 Trochodendron aralioides HOM05D002813 ORTHO05D003203 6.5e-23 111.3 113 44.2
Eucgr.C02935 Eucalyptus grandis HOM05D002813 ORTHO05D003203 8.5e-23 110.9 110 43.6
Ciclev10010367m.g Citrus clementina HOM05D002813 ORTHO05D003203 1.9e-22 109.8 110 44.5
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 7.2e-22 107.8 110 48.2
Duzib168G2404 Durio zibethinus HOM05D002813 ORTHO05D003203 9.5e-22 107.5 110 50.0
TWI63G1080 Tripterygium wilfordii HOM05D002813 ORTHO05D003203 9.5e-22 107.5 106 50.0
ATR0705G192 Amborella trichopoda HOM05D002813 ORTHO05D003203 1.2e-21 107.1 110 47.3
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 1.6e-21 106.7 110 47.3
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 1.6e-21 106.7 110 47.3
Manes.16G075500 Manihot esculenta HOM05D002813 ORTHO05D003203 8.0e-21 104.4 92 52.2
Prupe.1G448200 Prunus persica HOM05D002813 ORTHO05D003203 1.4e-20 103.6 101 48.5
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 1.8e-20 103.2 108 39.8
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 2.3e-20 102.8 108 44.4
CiPaw.07G204200 Carya illinoinensis HOM05D002813 ORTHO05D003203 4.0e-20 102.1 110 41.8
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 3.4e-19 99.0 95 51.6
SGA_v2.0_scaffold103G30003 Striga asiatica HOM05D002813 ORTHO05D003203 1.3e-18 97.1 109 44.0
MD15G1093400 Malus domestica HOM05D002813 ORTHO05D003203 1.7e-18 96.7 91 48.4
Mapoly0100s0050 Marchantia polymorpha HOM05D002813 ORTHO05D003203 8.3e-18 94.4 111 36.0
SEGI_23038 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 1.4e-17 93.6 111 41.4
Actinidia14674 Actinidia chinensis HOM05D002813 ORTHO05D003203 1.8e-17 93.2 86 48.8
FAN05G5767 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.7e-16 89.4 101 46.5
Atru.chr7.2088 Acer truncatum HOM05D002813 ORTHO05D003203 7.8e-16 87.8 103 40.8
FAN02G4465 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.3e-15 87.0 101 45.5
RcHm_v2.0_Chr2g0157391 Rosa chinensis HOM05D002813 ORTHO05D003203 6.6e-15 84.7 101 44.6
FvH4_6g41671 Fragaria vesca HOM05D002813 ORTHO05D003203 1.5e-14 83.6 101 44.6
HanXRQChr12g0371761 Helianthus annuus HOM05D002813 ORTHO05D003203 4.3e-14 82.0 114 36.8
Lsat_1_v5_gn_6_23140 Lactuca sativa HOM05D002813 ORTHO05D003203 7.3e-14 81.3 111 38.7
FvH4_2g32530 Fragaria vesca HOM05D002813 ORTHO05D003203 9.5e-14 80.9 109 42.2
HanXRQChr12g0371751 Helianthus annuus HOM05D002813 ORTHO05D003203 9.5e-14 80.9 113 35.4
HanXRQChr12g0371741 Helianthus annuus HOM05D002813 ORTHO05D003203 1.2e-13 80.5 110 38.2
HanXRQChr12g0371771 Helianthus annuus HOM05D002813 ORTHO05D003203 1.2e-13 80.5 113 35.4
FAN24G2117 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.1e-13 79.7 94 45.7
FAN24G2983 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.2e-12 75.1 95 43.2
FvH4_2g32630 Fragaria vesca HOM05D002813 ORTHO05D003203 8.9e-12 74.3 85 44.7
FvH4_2g32511 Fragaria vesca HOM05D002813 ORTHO05D003203 2.6e-11 72.8 91 41.8
FvH4_2g32520 Fragaria vesca HOM05D002813 ORTHO05D003203 5.7e-11 71.6 87 42.5
FvH4_5g12200 Fragaria vesca HOM05D002813 ORTHO05D003203 7.5e-11 71.2 91 44.0
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.8e-11 70.9 83 42.2
RcHm_v2.0_Chr6g0307021 Rosa chinensis HOM05D002813 ORTHO05D003203 9.8e-11 70.9 84 42.9
FAN15G1989 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-10 70.1 95 41.1
FAN27G1770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-10 70.1 92 40.2
RcHm_v2.0_Chr6g0307031 Rosa chinensis HOM05D002813 ORTHO05D003203 1.7e-10 70.1 83 39.8
FAN27G2375 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.2e-10 69.7 83 42.2
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 2.9e-10 69.3 83 41.0
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.9e-10 69.3 83 41.0
FAN27G2003 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.9e-10 69.3 90 44.4
FAN13G2791 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.9e-10 68.6 90 43.3
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.9e-10 68.6 83 42.2
FvH4_1g05120 Fragaria vesca HOM05D002813 ORTHO05D003203 6.4e-10 68.2 105 41.0
FvH4_5g12160 Fragaria vesca HOM05D002813 ORTHO05D003203 1.8e-09 66.6 90 42.2
FAN04G2105 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-09 66.6 90 42.2
FAN08G1174 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-09 66.6 90 42.2
FAN04G3192 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.4e-09 66.2 98 37.8
FvH4_2g34980 Fragaria vesca HOM05D002813 ORTHO05D003203 3.2e-09 65.9 83 39.8
FAN27G2509 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.2e-09 65.9 83 39.8
FAN04G1781 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-09 65.5 100 42.0
FAN20G2873 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-09 65.5 83 39.8
FAN18G1397 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.4e-09 65.1 90 41.1
FAN18G3569 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.0e-09 64.7 94 34.0
FAN25G1955 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.0e-09 64.7 79 43.0
FvH4_3g40700 Fragaria vesca HOM05D002813 ORTHO05D003203 9.2e-09 64.3 79 43.0
FAN11G0908 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.2e-09 64.3 79 43.0
FAN16G0815 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.2e-09 64.3 79 43.0
FAN21G1994 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-08 63.5 79 43.0
CSS0022259 Camellia sinensis var. sinensis HOM05D002813 ORTHO05D003203 2.0e-08 63.2 44 61.4
RcHm_v2.0_Chr3g0468781 Rosa chinensis HOM05D002813 ORTHO05D003203 2.0e-08 63.2 93 38.7
FAN18G3306 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.7e-08 62.8 77 39.0
RcHm_v2.0_Chr5g0073471 Rosa chinensis HOM05D002813 ORTHO05D003203 2.7e-08 62.8 105 37.1
FAN18G0728 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.5e-08 62.4 93 37.6
FAN18G2715 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.5e-08 62.4 88 38.6
RcHm_v2.0_Chr7g0185371 Rosa chinensis HOM05D002813 ORTHO05D003203 3.5e-08 62.4 92 39.1
FAN18G1460 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-07 60.8 91 37.4
FvH4_6g07350 Fragaria vesca HOM05D002813 ORTHO05D003203 1.3e-07 60.5 100 37.0
FAN04G0910 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.3e-07 60.5 89 37.1
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 1.7e-07 60.1 69 40.6
FvH4_7g18342 Fragaria vesca HOM05D002813 ORTHO05D003203 1.7e-07 60.1 90 41.1
FAN02G3770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-07 60.1 85 41.2
FAN05G0887 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-07 60.1 85 41.2
FAN06G4693 Fragaria x ananassa HOM05D000201 ORTHO05D007118 1.7e-07 60.1 90 41.1
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 2.3e-07 59.7 86 36.0
FAN20G0435 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.0e-07 59.3 84 39.3
FvH4_2g34990 Fragaria vesca HOM05D002813 ORTHO05D003203 3.9e-07 58.9 84 38.1
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 3.9e-07 58.9 100 36.0
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 3.9e-07 58.9 100 36.0
FAN18G2625 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.9e-07 58.9 87 37.9
FvH4_5g12211 Fragaria vesca HOM05D002813 ORTHO05D003203 5.0e-07 58.5 72 41.7
FvH4_2g32610 Fragaria vesca HOM05D002813 ORTHO05D003203 6.6e-07 58.2 96 39.6
FvH4_6g15310 Fragaria vesca HOM05D002813 ORTHO05D003203 6.6e-07 58.2 85 40.0
FAN02G3428 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.6e-07 58.2 86 40.7
FAN09G1014 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-07 57.8 85 40.0
FvH4_5g12190 Fragaria vesca HOM05D002813 ORTHO05D003203 1.1e-06 57.4 73 41.1
FvH4_6g11570 Fragaria vesca HOM05D002813 ORTHO05D003203 1.1e-06 57.4 95 38.9
FAN14G4978 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-06 57.4 100 33.0
FAN28G0547 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-06 57.0 89 38.2
FAN05G4830 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-06 56.6 92 39.1
FAN09G4302 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-06 56.6 92 39.1
FAN06G2895 Fragaria x ananassa HOM05D000201 ORTHO05D007118 2.5e-06 56.2 86 39.5
FAN15G3400 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.5e-06 56.2 84 36.9
FAN27G0414 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.5e-06 56.2 84 38.1
FvH4_7g07300 Fragaria vesca HOM05D002813 ORTHO05D003203 3.3e-06 55.8 89 39.3
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 3.3e-06 55.8 86 36.0
FvH4_5g33281 Fragaria vesca HOM05D002813 ORTHO05D003203 7.3e-06 54.7 89 33.7
FAN01G2630 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.3e-06 54.7 88 39.8
FAN14G2467 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.3e-06 54.7 92 38.0
FAN14G4635 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.3e-06 54.7 85 38.8
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 9.5e-06 54.3 85 35.3
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 9.5e-06 54.3 85 32.9
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 9.5e-06 54.3 85 32.9
FvH4_5g12240 Fragaria vesca HOM05D002813 ORTHO05D003203 9.5e-06 54.3 77 40.3
FAN18G4233 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.5e-06 54.3 77 40.3


User provided reference genes

Program Settings