Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010544 Solanum tuberosum HOM05D006652 ORTHO05D008645 1.7e-249 865.5 442 100.0
Solyc10g008020.3 Solanum lycopersicum HOM05D006652 ORTHO05D008645 6.7e-193 677.6 445 82.5
Sopen10g003890 Solanum pennellii HOM05D006652 ORTHO05D008645 1.9e-192 676.0 443 82.6
CAN.G782.5 Capsicum annuum HOM05D006652 ORTHO05D008645 1.9e-176 622.9 442 74.2
Nitab4.5_0000822g0100 Nicotiana tabacum HOM05D006652 ORTHO05D008645 5.3e-174 614.8 442 73.5
Nitab4.5_0008146g0020 Nicotiana tabacum HOM05D006652 ORTHO05D008645 2.3e-169 599.4 442 72.9
Peaxi162Scf00241g00812 Petunia axillaris HOM05D006652 ORTHO05D008645 3.3e-168 595.5 442 71.9
Migut.H02157 Erythranthe guttata HOM05D006652 ORTHO05D008645 9.1e-142 507.7 387 67.7
MSTRG.14312 Avicennia marina HOM05D006652 ORTHO05D008645 1.6e-141 506.9 385 67.8
Lj8C103T10 Lonicera japonica HOM05D006652 ORTHO05D008645 1.6e-141 506.9 387 69.0
vmacro09218 Vaccinium macrocarpon HOM05D006652 ORTHO05D008645 1.5e-139 500.4 385 66.0
QL08p041412 Quercus lobata HOM05D006652 ORTHO05D008645 5.5e-139 498.4 384 66.4
Dinv08786 Davidia involucrata HOM05D006652 ORTHO05D008645 7.2e-139 498.0 385 66.5
Lsat_1_v5_gn_8_140221 Lactuca sativa HOM05D006652 ORTHO05D008645 7.2e-139 498.0 385 65.7
Hma1.2p1_0166F.1_g073540 Hydrangea macrophylla HOM05D006652 ORTHO05D008645 1.6e-138 496.9 383 66.6
CSS0047332 Camellia sinensis var. sinensis HOM05D006652 ORTHO05D008645 6.1e-138 495.0 386 64.5
GSVIVG01020686001 Vitis vinifera HOM05D006652 ORTHO05D008645 6.1e-138 495.0 383 66.1
HanXRQChr17g0558041 Helianthus annuus HOM05D006652 ORTHO05D008645 8.8e-137 491.1 385 64.7
SalBow7G3656 Salvia bowleyana HOM05D006652 ORTHO05D008645 8.8e-137 491.1 425 61.6
TAR629G0548 Trochodendron aralioides HOM05D006652 ORTHO05D008645 1.2e-136 490.7 390 64.4
Aqoxy4G00418 Aquilegia oxysepala HOM05D006652 ORTHO05D008645 9.8e-136 487.6 385 64.2
Potri.019G089700 Populus trichocarpa HOM05D006652 ORTHO05D008645 4.8e-135 485.3 386 65.0
Sabra19G0100100 Salix brachista HOM05D006652 ORTHO05D008645 8.3e-135 484.6 386 65.3
Sabra19G0103300 Salix brachista HOM05D006652 ORTHO05D008645 1.1e-134 484.2 386 65.0
CiPaw.03G187000 Carya illinoinensis HOM05D006652 ORTHO05D008645 4.1e-134 482.3 394 63.7
Atru.chr6.2810_Atru.chr6.2811 Acer truncatum HOM05D006652 ORTHO05D008645 7.7e-133 478.0 385 64.7
arahy.Tifrunner.gnm1.ann1.KP1SVS Arachis hypogaea HOM05D006652 ORTHO05D008645 1.7e-132 476.9 387 63.3
ECA234G1589 Erigeron canadensis HOM05D006652 ORTHO05D008645 2.9e-132 476.1 385 62.6
Nn1g04382 Nelumbo nucifera HOM05D006652 ORTHO05D008645 1.1e-131 474.2 383 63.2
arahy.Tifrunner.gnm1.ann1.5ZDL5Q Arachis hypogaea HOM05D006652 ORTHO05D008645 2.5e-131 473.0 387 62.8
Medtr4g079750 Medicago truncatula HOM05D006652 ORTHO05D008645 2.5e-131 473.0 386 62.7
Ca_18890_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 1.6e-130 470.3 383 62.9
Eucgr.K01102 Eucalyptus grandis HOM05D006652 ORTHO05D008645 2.8e-130 469.5 443 57.3
EL10Ac9g20915 Beta vulgaris HOM05D006652 ORTHO05D008645 3.6e-130 469.2 383 63.4
unitig_21.g20276 Utricularia gibba HOM05D006652 ORTHO05D008645 4.7e-130 468.8 383 61.6
Lj3g0009013 Lotus japonicus HOM05D006652 ORTHO05D008645 6.1e-130 468.4 383 62.4
Hund07829 Selenicereus undatus HOM05D006652 ORTHO05D008645 3.0e-129 466.1 383 62.4
Glyma.12G122700 Glycine max HOM05D006652 ORTHO05D008645 1.5e-128 463.8 383 61.4
Thecc.01G148700 Theobroma cacao HOM05D006652 ORTHO05D008645 1.5e-128 463.8 387 62.0
Lalb_Chr19g0134921 Lupinus albus HOM05D006652 ORTHO05D008645 2.0e-128 463.4 383 61.6
AUR62038922 Chenopodium quinoa HOM05D006652 ORTHO05D008645 5.7e-128 461.8 385 61.3
Phvul.011G134400 Phaseolus vulgaris HOM05D006652 ORTHO05D008645 7.5e-128 461.5 383 60.1
Rhsim04G0074100 Rhododendron simsii HOM05D006652 ORTHO05D008645 9.8e-128 461.1 359 65.7
COL.COLO4_33547 Corchorus olitorius HOM05D006652 ORTHO05D008645 1.3e-127 460.7 388 61.3
Ciclev10015734m.g Citrus clementina HOM05D006652 ORTHO05D008645 2.2e-127 459.9 385 62.3
Gohir.A10G153800 Gossypium hirsutum HOM05D006652 ORTHO05D008645 8.3e-127 458.0 384 61.7
Gohir.D10G112300 Gossypium hirsutum HOM05D006652 ORTHO05D008645 2.4e-126 456.4 384 61.5
Gorai.011G124200 Gossypium raimondii HOM05D006652 ORTHO05D008645 2.4e-126 456.4 384 61.5
Glyma.06G283400 Glycine max HOM05D006652 ORTHO05D008645 3.2e-126 456.1 383 59.8
SGA_v2.0_scaffold109G31132 Striga asiatica HOM05D006652 ORTHO05D008645 1.2e-125 454.1 503 52.1
VMungo1127G0176 Vigna mungo HOM05D006652 ORTHO05D008645 7.8e-125 451.4 383 60.1
Os10g0181600 Oryza sativa ssp. japonica HOM05D006652 ORTHO05D008645 5.0e-124 448.7 384 59.4
ATR0661G163 Amborella trichopoda HOM05D006652 ORTHO05D008645 6.6e-124 448.4 382 59.2
Glyma.06G283600 Glycine max HOM05D006652 ORTHO05D008645 1.1e-123 447.6 383 58.5
Zm00001eb223890 Zea mays HOM05D006652 ORTHO05D008645 2.5e-123 446.4 388 59.5
PGR142G2816 Punica granatum HOM05D006652 ORTHO05D008645 1.2e-122 444.1 391 58.8
MBI11_g14404_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 6.8e-121 438.3 386 60.6
CsaV3_6G018460 Cucumis sativus L. HOM05D006652 ORTHO05D008645 3.4e-120 436.0 386 59.1
Actinidia39342 Actinidia chinensis HOM05D006652 ORTHO05D008645 4.4e-120 435.6 343 65.3
Duzib187G0644 Durio zibethinus HOM05D006652 ORTHO05D008645 5.8e-120 435.3 394 57.9
Cc05_g08190 Coffea canephora HOM05D006652 ORTHO05D008645 5.6e-115 418.7 340 63.5
Cc05_g08160 Coffea canephora HOM05D006652 ORTHO05D008645 6.2e-114 415.2 367 60.5
TWI59G0297 Tripterygium wilfordii HOM05D006652 ORTHO05D008645 1.5e-107 394.0 329 62.3
Psat7g166280 Pisum sativum HOM05D006652 ORTHO05D008645 3.6e-106 389.4 322 63.4
Manes.13G137800 Manihot esculenta HOM05D006652 ORTHO05D008645 4.7e-106 389.0 334 59.9
AUR62038997 Chenopodium quinoa HOM05D006652 ORTHO05D008645 1.8e-105 387.1 416 51.0
Sed0018596 Sechium edule HOM05D006652 ORTHO05D008645 2.1e-101 373.6 340 56.5
Pp3c3_7460 Physcomitrium patens HOM05D006652 ORTHO05D008645 1.0e-100 371.3 385 50.1
CDE11G0921 Ceratophyllum demersum HOM05D006652 ORTHO05D008645 1.7e-100 370.5 329 57.8
SMO334G0043 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 1.2e-98 364.4 388 51.0
Glyma.06G283500 Glycine max HOM05D006652 ORTHO05D008645 4.9e-95 352.4 354 52.5
Mapoly0061s0036 Marchantia polymorpha HOM05D006652 ORTHO05D008645 3.9e-92 342.8 381 47.0
DCAR_013062 Daucus carota HOM05D006652 ORTHO05D008645 1.6e-85 320.9 383 50.7
MBI11_g19676_MAGBIO Magnolia biondii HOM05D006652 ORTHO05D008645 6.6e-84 315.5 347 51.3
ClCG02G017930 Citrullus lanatus HOM05D006652 ORTHO05D008645 9.6e-83 311.6 412 45.6
Cc00_g35820 Coffea canephora HOM05D006652 ORTHO05D008645 1.8e-73 280.8 286 55.2
AagrBONN_evm.TU.Sc2ySwM_228.444 Anthoceros agrestis HOM05D006652 ORTHO05D008645 3.4e-72 276.6 233 60.1
CBR_g20425 Chara braunii HOM05D006652 ORTHO05D008645 2.3e-68 263.8 390 38.5
Zm00001eb307930 Zea mays HOM05D006652 ORTHO05D008645 1.4e-65 254.6 266 48.9
PRCOL_00002204 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 5.8e-64 249.2 384 38.5
MCO11G400 Micromonas commoda HOM05D006652 ORTHO05D008645 8.4e-63 245.4 380 37.4
TPR.G21861 Trifolium pratense HOM05D006652 ORTHO05D008645 4.2e-62 243.0 270 51.1
PGR142G0648 Punica granatum HOM05D006652 ORTHO05D008645 4.6e-61 239.6 273 48.0
Mapoly0285s0004 Marchantia polymorpha HOM05D006652 ORTHO05D008645 7.9e-61 238.8 220 54.1
Ca_18889_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 3.9e-60 236.5 239 54.4
CBR_g20426 Chara braunii HOM05D006652 ORTHO05D008645 3.7e-58 229.9 459 33.8
MELO3C019759.2 Cucumis melo HOM05D006652 ORTHO05D008645 6.9e-57 225.7 240 52.1
Zm00001eb127120 Zea mays HOM05D006652 ORTHO05D008645 6.9e-57 225.7 161 67.7
Zm00001eb202810 Zea mays HOM05D006652 ORTHO05D008645 3.6e-53 213.4 324 41.4
Cre03.g200350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 1.7e-50 204.5 393 33.1
Zm00001eb155780 Zea mays HOM05D006652 ORTHO05D008645 1.7e-50 204.5 312 40.4
Haze_13351 Corylus avellana HOM05D006652 ORTHO05D008645 2.0e-48 197.6 120 79.2
arahy.Tifrunner.gnm1.ann1.MYHL2J Arachis hypogaea HOM05D006652 ORTHO05D008645 1.4e-44 184.9 141 63.8
SMO118G0546 Selaginella moellendorffii HOM05D006652 ORTHO05D008645 6.7e-44 182.6 256 40.2
Pp3c17_23540 Physcomitrium patens HOM05D006652 ORTHO05D008645 1.3e-42 178.3 242 40.1
Mapoly0050s0024 Marchantia polymorpha HOM05D006652 ORTHO05D008645 2.6e-40 170.6 240 39.2
Cre06.g259401 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D008645 3.5e-40 170.2 245 39.6
CBR_g34298 Chara braunii HOM05D006652 ORTHO05D008645 4.5e-40 169.9 377 33.4
Haze_13350 Corylus avellana HOM05D006652 ORTHO05D008645 6.5e-39 166.0 93 81.7
SEGI_35274 Sequoiadendron giganteum HOM05D006652 ORTHO05D008645 1.5e-38 164.9 240 39.6
PRCOL_00006996 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 3.1e-33 147.1 248 36.3
TPR.G21859 Trifolium pratense HOM05D006652 ORTHO05D008645 3.5e-32 143.7 138 52.9
MCO08G076 Micromonas commoda HOM05D006652 ORTHO05D008645 1.3e-31 141.7 250 33.2
AagrBONN_evm.TU.Sc2ySwM_117.2543 Anthoceros agrestis HOM05D006652 ORTHO05D008645 8.5e-31 139.0 174 44.8
Zm00001eb272210 Zea mays HOM05D006652 ORTHO05D008645 1.1e-30 138.7 265 35.8
TPR.G21704 Trifolium pratense HOM05D006652 ORTHO05D008645 2.1e-29 134.4 118 57.6
AUR62024835 Chenopodium quinoa HOM05D006652 ORTHO05D008645 1.0e-28 132.1 94 67.0
ECA234G0151 Erigeron canadensis HOM05D006652 ORTHO05D008645 1.8e-28 131.3 169 43.2
Ca_18891_v3 Cicer arietinum L. HOM05D006652 ORTHO05D008645 3.4e-27 127.1 161 45.3
Cc05_g08180 Coffea canephora HOM05D006652 ORTHO05D008645 8.8e-20 102.4 56 89.3
Cc05_g08150 Coffea canephora HOM05D006652 ORTHO05D008645 4.4e-19 100.1 56 87.5
Glyma.12G122501 Glycine max HOM05D006652 ORTHO05D008645 4.9e-18 96.7 87 52.9
PRCOL_00001996 Prasinoderma coloniale HOM05D006652 ORTHO05D028803 7.7e-16 89.4 239 27.6
MCO09G339 Micromonas commoda HOM05D006652 ORTHO05D268879 2.8e-13 80.9 234 24.8
PRCOL_00002129 Prasinoderma coloniale HOM05D006652 ORTHO05D008645 8.9e-12 75.9 159 32.1
Zm00001eb048070 Zea mays HOM05D001272 ORTHO05D001099 9.8e-11 72.4 70 52.9
Cre06.g286350 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 1.3e-10 72.0 231 24.7
MCO15G420 Micromonas commoda HOM05D006652 ORTHO05D028803 1.3e-10 72.0 225 22.7
Ah.07g202300 Amaranthus hybridus HOM05D006652 ORTHO05D008645 6.4e-10 69.7 42 69.0
Cre06.g286300 Chlamydomonas reinhardtii HOM05D006652 ORTHO05D028803 2.4e-09 67.8 162 28.4
Haze_13352 Corylus avellana HOM05D006652 ORTHO05D008645 4.1e-09 67.0 38 73.7
Ah.08g222620 Amaranthus hybridus HOM05D006652 ORTHO05D008645 1.6e-08 65.1 42 64.3
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 1.1e-06 58.9 169 31.4
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 5.6e-06 56.6 104 33.7


User provided reference genes

Program Settings