Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 7.4e-131 472.6 636 100.0
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.9e-58 231.5 235 58.7
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 2.8e-53 214.9 111 95.5
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 9.6e-46 189.9 111 83.8
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 3.7e-45 188.0 111 82.9
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.4e-44 186.0 111 81.1
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.8e-39 169.1 108 75.9
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 5.7e-38 164.1 111 71.2
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.4e-36 159.5 111 70.3
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 5.9e-35 154.1 111 68.5
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.3e-34 152.9 125 60.0
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.6e-32 146.0 110 65.5
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 4.3e-30 137.9 108 62.0
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.5e-27 127.9 107 57.0
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 7.7e-27 127.1 95 65.3
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 4.2e-25 121.3 114 55.3
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 6.1e-24 117.5 113 55.8
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.0e-22 112.5 115 48.7
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.8e-21 108.6 89 58.4
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.8e-21 107.8 163 39.9
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 4.8e-21 107.8 171 38.6
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 1.8e-20 105.9 107 53.3
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.4e-20 105.5 110 49.1
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 3.1e-20 105.1 109 48.6
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.1e-20 104.8 90 54.4
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 2.0e-19 102.4 111 43.2
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 4.5e-19 101.3 112 42.9
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 4.5e-19 101.3 115 45.2
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.5e-19 101.3 115 45.2
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.0e-18 100.1 78 62.8
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.7e-18 99.4 109 45.9
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.2e-18 99.0 108 43.5
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 2.2e-18 99.0 109 41.3
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 2.9e-18 98.6 109 41.3
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.9e-18 98.6 115 43.5
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.9e-18 98.6 79 58.2
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 3.8e-18 98.2 115 44.3
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 3.8e-18 98.2 78 61.5
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 5.0e-18 97.8 97 51.5
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 5.0e-18 97.8 78 61.5
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 6.5e-18 97.4 111 46.8
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 8.5e-18 97.1 76 59.2
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.1e-17 96.7 155 38.7
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.4e-17 96.3 126 44.4
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.9e-17 95.9 115 43.5
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 2.5e-17 95.5 110 46.4
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.2e-17 95.1 93 47.3
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 3.2e-17 95.1 96 50.0
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 4.2e-17 94.7 93 51.6
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 5.5e-17 94.4 110 41.8
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 5.5e-17 94.4 123 44.7
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 5.5e-17 94.4 109 39.4
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 1.6e-16 92.8 126 40.5
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.6e-16 92.8 97 42.3
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 2.1e-16 92.4 114 43.9
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 3.6e-16 91.7 101 45.5
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 4.7e-16 91.3 79 51.9
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 6.1e-16 90.9 96 41.7
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 6.1e-16 90.9 109 45.0
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 2.3e-15 89.0 89 53.9
Peaxi162Scf00450g00074 Petunia axillaris HOM05D004255 ORTHO05D004815 2.3e-15 89.0 53 77.4
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 3.0e-15 88.6 110 38.2
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 3.9e-15 88.2 110 39.1
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 3.9e-15 88.2 130 39.2
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 3.9e-15 88.2 116 44.0
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.9e-15 88.2 94 50.0
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 5.2e-15 87.8 126 40.5
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 1.1e-14 86.7 69 63.8
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.0e-14 85.9 97 49.5
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 2.0e-14 85.9 131 41.2
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.6e-14 85.5 109 38.5
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.3e-14 85.1 109 41.3
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 4.4e-14 84.7 71 57.7
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.2e-13 82.4 88 44.3
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 6.3e-13 80.9 79 53.2
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 8.2e-13 80.5 109 35.8
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 5.3e-12 77.8 98 40.8
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 5.3e-12 77.8 92 43.5
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 3.5e-11 75.1 56 67.9
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 7.7e-11 73.9 80 47.5
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.0e-10 73.6 102 33.3
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 1.3e-10 73.2 81 42.0
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.7e-10 72.8 79 44.3
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.7e-10 72.8 79 38.0
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 2.9e-10 72.0 109 33.0
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.9e-10 72.0 80 45.0
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 6.5e-10 70.9 72 45.8
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.1e-09 70.1 58 53.4
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 1.1e-09 70.1 69 49.3
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.1e-09 70.1 87 40.2
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.5e-09 69.7 83 38.6
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.9e-09 69.3 78 44.9
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.9e-09 69.3 88 42.0
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.5e-09 68.9 56 51.8
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 2.5e-09 68.9 86 43.0
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.2e-09 68.6 72 47.2
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 3.2e-09 68.6 96 30.2
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 4.2e-09 68.2 86 37.2
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 5.5e-09 67.8 69 47.8
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 9.4e-09 67.0 109 30.3
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.2e-08 66.6 79 39.2
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.2e-08 66.6 50 58.0
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.6e-08 66.2 48 62.5
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.1e-08 65.9 56 51.8
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 2.1e-08 65.9 74 40.5
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.6e-08 65.1 74 43.2
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.0e-07 63.5 50 54.0
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.4e-07 63.2 89 34.8
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 1.8e-07 62.8 72 44.4
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.3e-07 62.4 64 43.8
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 2.3e-07 62.4 130 33.8
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.3e-07 62.4 79 35.4
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 2.3e-07 62.4 76 40.8
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 3.0e-07 62.0 79 31.6
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 3.0e-07 62.0 55 49.1
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 3.0e-07 62.0 55 49.1
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.0e-07 62.0 54 50.0
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 4.0e-07 61.6 55 49.1
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 4.0e-07 61.6 55 49.1
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.0e-07 61.6 80 36.2
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 4.0e-07 61.6 80 36.2
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 5.2e-07 61.2 55 49.1
CAN.G1169.10 Capsicum annuum HOM05D023770 ORTHO05D024770 5.2e-07 61.2 56 60.7
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 5.2e-07 61.2 81 40.7
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 5.2e-07 61.2 105 36.2
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 5.2e-07 61.2 85 31.8
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 5.2e-07 61.2 85 31.8
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 6.7e-07 60.8 84 39.3
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 2.0e-06 59.3 68 39.7
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 4.4e-06 58.2 54 46.3
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.4e-06 58.2 80 33.8
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 4.4e-06 58.2 80 33.8
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.4e-06 58.2 80 36.2


User provided reference genes

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