Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 8.5e-75 283.5 134 100.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 3.5e-68 261.5 134 94.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 5.0e-67 257.7 134 93.3
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 6.8e-56 220.7 137 78.8
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 2.4e-45 185.7 95 87.4
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 3.5e-44 181.8 93 84.9
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.5e-42 176.4 93 84.9
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 5.6e-42 174.5 88 85.2
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 7.2e-42 174.1 88 85.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 7.2e-42 174.1 88 85.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.1e-41 172.6 97 77.3
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 2.1e-41 172.6 104 75.0
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.6e-41 171.8 92 82.6
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.1e-41 171.0 139 60.4
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 6.1e-41 171.0 97 76.3
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 6.1e-41 171.0 137 63.5
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 8.0e-41 170.6 94 80.9
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 8.0e-41 170.6 97 79.4
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.0e-40 170.2 81 91.4
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.0e-40 170.2 124 63.7
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.0e-40 170.2 102 76.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.8e-40 169.5 100 76.0
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.0e-40 168.7 99 72.7
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 3.0e-40 168.7 92 78.3
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 5.2e-40 167.9 94 76.6
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 6.8e-40 167.5 94 78.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 6.8e-40 167.5 144 61.1
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 8.9e-40 167.2 96 75.0
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.2e-39 166.8 96 75.0
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.2e-39 166.8 110 66.4
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.5e-39 166.4 109 67.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.5e-39 166.4 91 79.1
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.0e-39 166.0 94 77.7
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.6e-39 165.6 143 59.4
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 3.4e-39 165.2 94 77.7
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 3.4e-39 165.2 97 77.3
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 4.4e-39 164.9 99 73.7
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 4.4e-39 164.9 139 59.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 4.4e-39 164.9 114 66.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 4.4e-39 164.9 137 60.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.7e-39 164.5 94 76.6
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.7e-39 164.5 83 84.3
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 9.8e-39 163.7 91 80.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.3e-38 163.3 139 58.3
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.3e-38 163.3 103 71.8
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.7e-38 162.9 126 64.3
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.2e-38 162.5 94 76.6
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.2e-38 162.5 94 76.6
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.2e-38 162.5 81 84.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.9e-38 162.2 136 58.1
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 3.7e-38 161.8 121 62.8
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 6.4e-38 161.0 140 57.1
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 6.4e-38 161.0 94 77.7
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 6.4e-38 161.0 97 73.2
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 6.4e-38 161.0 142 58.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 8.3e-38 160.6 109 65.1
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.1e-37 160.2 87 78.2
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.4e-37 159.8 108 67.6
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.4e-37 159.1 112 67.9
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 3.2e-37 158.7 81 85.2
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-37 158.7 81 85.2
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-37 158.7 81 85.2
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.2e-37 158.7 96 75.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 7.0e-37 157.5 81 84.0
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 9.2e-37 157.1 94 71.3
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 2.0e-36 156.0 132 56.8
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.5e-36 155.2 81 80.2
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 3.5e-36 155.2 100 72.0
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 4.6e-36 154.8 127 58.3
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 5.9e-36 154.5 98 70.4
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 7.8e-36 154.1 116 63.8
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.3e-35 153.3 90 74.4
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.3e-35 153.3 100 68.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.3e-35 153.3 79 82.3
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 2.9e-35 152.1 96 70.8
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 5.0e-35 151.4 98 70.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 8.6e-35 150.6 88 75.0
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 3.6e-33 145.2 155 49.0
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 1.5e-31 139.8 81 72.8
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 5.8e-31 137.9 128 53.1
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 1.7e-30 136.3 81 70.4
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.9e-29 132.9 81 67.9
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 4.1e-29 131.7 133 50.4
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 9.2e-29 130.6 211 40.8
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 1.2e-28 130.2 212 40.6
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 2.7e-28 129.0 171 42.1
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 2.2e-22 109.4 51 88.2
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 6.4e-22 107.8 55 78.2
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 6.4e-22 107.8 51 92.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.1e-21 107.1 52 86.5
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 3.2e-21 105.5 91 57.1
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 7.1e-21 104.4 51 86.3
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 2.1e-12 76.3 78 52.6
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 2.3e-11 72.8 48 66.7
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 1.5e-10 70.1 34 76.5
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.9e-10 69.7 85 38.8
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.9e-10 69.7 80 42.5
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.6e-09 65.5 86 39.5
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 4.7e-09 65.1 43 67.4
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 8.1e-09 64.3 80 38.8
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.1e-08 63.9 77 40.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.1e-08 63.9 87 37.9
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-08 63.5 86 40.7
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.4e-08 63.5 86 40.7
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.4e-08 62.8 87 39.1
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 2.4e-08 62.8 79 38.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 3.1e-08 62.4 87 37.9
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 36.7
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 38.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 4.0e-08 62.0 93 34.4
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 4.0e-08 62.0 77 39.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 5.2e-08 61.6 87 37.9
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 5.2e-08 61.6 79 40.5
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 6.8e-08 61.2 79 36.7
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 6.8e-08 61.2 80 38.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.9e-08 60.8 90 36.7
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.2e-07 60.5 87 36.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.5e-07 60.1 85 35.3
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.5e-07 60.1 85 35.3
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.0e-07 59.7 87 34.5
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.6e-07 59.3 92 31.5
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.4e-07 58.9 77 37.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 3.4e-07 58.9 97 32.0
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 3.4e-07 58.9 88 35.2
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 3.4e-07 58.9 86 37.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 4.4e-07 58.5 92 31.5
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 4.4e-07 58.5 87 32.2
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 4.4e-07 58.5 80 37.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 5.8e-07 58.2 80 38.8
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 5.8e-07 58.2 79 36.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 5.8e-07 58.2 88 34.1
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 5.8e-07 58.2 88 35.2
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 5.8e-07 58.2 79 35.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 5.8e-07 58.2 79 36.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 5.8e-07 58.2 96 34.4
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 38.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 36.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 36.7
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 9.9e-07 57.4 86 36.0
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.3e-06 57.0 80 35.0
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.3e-06 57.0 79 35.4
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.3e-06 57.0 79 36.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.3e-06 57.0 91 31.9
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.7e-06 56.6 79 36.7
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.2e-06 56.2 77 36.4
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.2e-06 56.2 79 35.4
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.2e-06 56.2 79 35.4
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.9e-06 55.8 77 37.7
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.8e-06 55.5 87 33.3
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 4.9e-06 55.1 94 28.7
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 4.9e-06 55.1 86 34.9
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 4.9e-06 55.1 79 34.2
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 8.4e-06 54.3 95 33.7


User provided reference genes

Program Settings