Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 3.6e-152 541.6 277 100.0
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.2e-142 510.0 270 95.6
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.5e-142 509.6 270 95.6
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.1e-132 476.9 276 88.4
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 1.2e-131 473.4 270 89.3
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.3e-130 469.2 270 88.5
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 2.1e-128 462.6 273 85.7
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 6.8e-127 457.6 276 84.1
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.4e-126 454.9 254 89.4
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.6e-123 444.9 250 88.4
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 5.8e-102 374.8 273 70.3
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 7.1e-100 367.9 274 67.9
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.5e-99 365.5 274 67.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 1.0e-98 364.0 273 68.1
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.7e-98 363.2 276 67.4
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.3e-98 362.8 206 87.9
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.3e-97 357.8 275 68.4
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 6.2e-96 354.8 234 73.9
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 8.1e-96 354.4 273 66.3
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.2e-94 350.5 275 66.9
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.5e-94 350.1 277 66.4
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.0e-94 349.7 273 65.2
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.8e-94 348.2 275 65.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 5.8e-94 348.2 274 64.2
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.3e-93 347.1 274 65.0
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.3e-93 347.1 275 64.4
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 2.2e-93 346.3 282 66.3
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.9e-93 345.9 241 72.6
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 3.8e-93 345.5 275 66.5
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 3.8e-93 345.5 274 65.0
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 4.9e-93 345.1 268 67.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 4.9e-93 345.1 238 73.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 8.4e-93 344.4 232 72.8
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 8.4e-93 344.4 241 71.8
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.1e-92 344.0 275 64.4
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.9e-92 343.2 273 64.1
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.4e-92 342.8 236 74.2
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.4e-92 342.8 277 63.9
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 3.2e-92 342.4 274 62.4
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 3.2e-92 342.4 274 65.7
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 4.2e-92 342.0 203 81.8
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 4.2e-92 342.0 241 72.6
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 5.4e-92 341.7 242 71.5
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 5.4e-92 341.7 277 64.6
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.2e-91 340.5 206 79.6
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 2.1e-91 339.7 239 69.9
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 2.1e-91 339.7 278 62.9
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 2.7e-91 339.3 275 64.0
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 3.5e-91 339.0 277 63.9
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 6.0e-91 338.2 275 64.0
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 7.8e-91 337.8 269 64.3
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.0e-90 337.4 204 79.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.0e-90 337.4 264 65.5
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-90 336.7 246 69.1
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 2.3e-90 336.3 274 64.2
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.0e-90 335.9 275 64.0
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 3.9e-90 335.5 246 69.5
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 6.6e-90 334.7 267 63.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 6.6e-90 334.7 277 63.5
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 8.7e-90 334.3 239 69.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.1e-89 334.0 196 89.8
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 1.1e-89 334.0 268 63.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.1e-89 334.0 247 68.0
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.5e-89 333.6 247 68.0
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.5e-89 333.6 255 65.5
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.5e-89 333.6 227 71.8
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.5e-89 333.6 277 63.9
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.3e-89 332.4 277 62.8
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.6e-89 331.6 266 65.0
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 7.3e-89 331.3 255 66.3
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 7.3e-89 331.3 246 68.3
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 7.3e-89 331.3 228 72.8
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.6e-89 330.9 204 77.0
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 9.6e-89 330.9 231 70.1
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 9.6e-89 330.9 243 69.5
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.3e-88 330.5 245 69.0
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.3e-88 330.5 204 78.9
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 1.6e-88 330.1 234 70.1
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.6e-88 330.1 241 67.6
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 2.8e-88 329.3 223 72.6
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.8e-88 329.3 232 70.3
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.6e-88 328.9 212 74.5
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 8.1e-88 327.8 226 69.5
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.8e-87 326.6 239 67.8
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 2.4e-87 326.2 239 67.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 6.9e-87 324.7 241 65.1
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 2.0e-86 323.2 275 59.3
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 7.6e-86 321.2 204 75.5
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 7.6e-86 321.2 233 68.7
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.2e-85 319.7 242 66.1
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 2.2e-85 319.7 274 59.1
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.9e-85 319.3 244 64.3
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.8e-85 318.9 244 64.3
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 8.4e-85 317.8 240 65.8
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 8.4e-85 317.8 241 66.8
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.1e-84 317.4 271 59.4
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 3.2e-84 315.8 241 66.4
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 5.4e-84 315.1 241 66.0
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 7.1e-84 314.7 246 65.0
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.2e-83 313.9 243 65.4
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.6e-83 313.5 234 67.9
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.6e-83 313.5 273 62.3
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.6e-83 312.0 273 61.9
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.5e-81 307.0 253 63.6
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 3.1e-79 299.3 193 74.6
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.1e-79 299.3 249 61.8
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 3.4e-78 295.8 226 63.7
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 9.3e-76 287.7 206 66.5
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.1e-75 286.6 207 66.7
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.1e-75 286.6 202 68.8
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.5e-73 279.6 249 59.8
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 4.3e-73 278.9 251 57.8
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.6e-72 276.9 256 57.0
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.4e-71 273.9 216 60.2
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.2e-68 262.3 213 60.6
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 6.9e-63 245.0 222 60.8
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 5.9e-62 241.9 179 69.3
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 7.2e-60 235.0 232 51.7
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.6e-59 233.8 229 53.7
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.3e-56 224.2 205 52.2
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 9.0e-55 218.0 209 53.1
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 6.1e-51 205.3 209 50.7
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.8e-50 203.8 119 79.0
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 3.9e-50 202.6 227 44.1
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.3e-49 199.1 174 59.8
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 2.4e-47 193.4 167 61.7
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 2.0e-46 190.3 241 38.6
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.4e-44 184.1 109 81.7
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.3e-37 161.0 212 39.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 3.3e-33 146.4 102 71.6
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.4e-31 141.0 130 58.5
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 5.3e-31 139.0 138 58.0
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 5.7e-25 119.0 88 69.3
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 4.8e-24 115.9 104 56.7
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.3e-21 107.8 154 37.0
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 5.7e-17 92.4 62 74.2
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 5.6e-12 75.9 301 30.2
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 7.3e-12 75.5 69 58.0
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 2.3e-10 70.5 44 75.0
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 1.7e-08 64.3 60 58.3


User provided reference genes

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