Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010206 Solanum tuberosum HOM05D000907 ORTHO05D394719 8.9e-76 287.0 155 100.0
Sopen01g017580 Solanum pennellii HOM05D000907 ORTHO05D000753 4.8e-13 78.6 50 90.0
PGSC0003DMG400010905 Solanum tuberosum HOM05D000907 ORTHO05D000753 4.8e-13 78.6 50 90.0
Solyc01g034080.1 Solanum lycopersicum HOM05D000907 ORTHO05D000753 6.3e-13 78.2 50 88.0
Nitab4.5_0000254g0150 Nicotiana tabacum HOM05D000907 ORTHO05D000753 3.1e-12 75.9 51 82.4
Nitab4.5_0009696g0020 Nicotiana tabacum HOM05D000907 ORTHO05D000753 1.5e-11 73.6 50 80.0
Manes.03G085400 Manihot esculenta HOM05D000907 ORTHO05D000753 2.0e-11 73.2 49 83.7
RcHm_v2.0_Chr5g0082861 Rosa chinensis HOM05D000907 ORTHO05D000753 2.6e-11 72.8 50 78.0
MSTRG.18010 Avicennia marina HOM05D000907 ORTHO05D000753 4.5e-11 72.0 50 82.0
SGA_v2.0_scaffold3G01661 Striga asiatica HOM05D000907 ORTHO05D000753 4.5e-11 72.0 50 86.0
CAN.G625.54 Capsicum annuum HOM05D000907 ORTHO05D000753 5.9e-11 71.6 50 84.0
Hma1.2p1_2067F.1_g313075 Hydrangea macrophylla HOM05D000907 ORTHO05D000753 5.9e-11 71.6 50 76.0
SGA_v2.0_scaffold120G32835 Striga asiatica HOM05D000907 ORTHO05D000753 5.9e-11 71.6 50 82.0
CSS0003107 Camellia sinensis var. sinensis HOM05D000907 ORTHO05D000753 7.7e-11 71.2 50 80.0
CSS0033812 Camellia sinensis var. sinensis HOM05D000907 ORTHO05D000753 7.7e-11 71.2 50 80.0
Peaxi162Scf01042g00022 Petunia axillaris HOM05D000907 ORTHO05D000753 7.7e-11 71.2 50 80.0
Oeu043318.1 Olea europaea HOM05D000907 ORTHO05D000753 1.0e-10 70.9 50 80.0
Potri.001G007300 Populus trichocarpa HOM05D000907 ORTHO05D000753 2.2e-10 69.7 50 76.0
Sabra01G0005600 Salix brachista HOM05D000907 ORTHO05D000753 2.2e-10 69.7 50 78.0
Cc01_g02540 Coffea canephora HOM05D000907 ORTHO05D000753 2.9e-10 69.3 50 76.0
Gohir.A05G000400 Gossypium hirsutum HOM05D000907 ORTHO05D000753 2.9e-10 69.3 50 74.0
Gohir.D05G000600 Gossypium hirsutum HOM05D000907 ORTHO05D000753 3.8e-10 68.9 50 74.0
Gorai.009G000400 Gossypium raimondii HOM05D000907 ORTHO05D000753 3.8e-10 68.9 50 74.0
Manes.15G106600 Manihot esculenta HOM05D000907 ORTHO05D000753 3.8e-10 68.9 47 80.9
Prupe.6G006500 Prunus persica HOM05D000907 ORTHO05D000753 3.8e-10 68.9 50 76.0
Thecc.09G210300 Theobroma cacao HOM05D000907 ORTHO05D000753 5.0e-10 68.6 50 76.0
TPR.G17776 Trifolium pratense HOM05D000907 ORTHO05D000753 5.0e-10 68.6 50 80.0
EL10Ac4g10361 Beta vulgaris HOM05D000907 ORTHO05D000753 6.5e-10 68.2 50 72.0
AUR62000015 Chenopodium quinoa HOM05D000907 ORTHO05D000753 6.5e-10 68.2 50 72.0
AUR62019185 Chenopodium quinoa HOM05D000907 ORTHO05D000753 6.5e-10 68.2 50 72.0
Ciclev10015109m.g Citrus clementina HOM05D000907 ORTHO05D000753 1.1e-09 67.4 50 74.0
Nitab4.5_0000775g0030 Nicotiana tabacum HOM05D000907 ORTHO05D000753 1.1e-09 67.4 59 69.5
CAN.G158.16 Capsicum annuum HOM05D000907 ORTHO05D000753 1.4e-09 67.0 50 78.0
Medtr5g064750 Medicago truncatula HOM05D000907 ORTHO05D000753 1.4e-09 67.0 50 76.0
CANSAT11G0876 Cannabis sativa HOM05D000907 ORTHO05D000753 1.9e-09 66.6 50 72.0
Ca_16007_v3 Cicer arietinum L. HOM05D000907 ORTHO05D000753 1.9e-09 66.6 50 76.0
MD03G1006800 Malus domestica HOM05D000907 ORTHO05D000753 1.9e-09 66.6 50 74.0
A03p38290 Brassica napus HOM05D000907 ORTHO05D000753 2.5e-09 66.2 50 72.0
BraA03t12982Z Brassica rapa HOM05D000907 ORTHO05D000753 2.5e-09 66.2 50 72.0
Haze_22973 Corylus avellana HOM05D000907 ORTHO05D000753 2.5e-09 66.2 47 76.6
Dinv13439 Davidia involucrata HOM05D000907 ORTHO05D000753 2.5e-09 66.2 50 74.0
Duzib168G0005 Durio zibethinus HOM05D000907 ORTHO05D000753 2.5e-09 66.2 50 72.0
FAN25G3622 Fragaria x ananassa HOM05D000907 ORTHO05D000753 2.5e-09 66.2 50 72.0
Lj1g0016443 Lotus japonicus HOM05D000907 ORTHO05D000753 2.5e-09 66.2 50 76.0
MD11G1010000 Malus domestica HOM05D000907 ORTHO05D000753 3.2e-09 65.9 50 72.0
Solyc01g005920.3 Solanum lycopersicum HOM05D000907 ORTHO05D000753 3.2e-09 65.9 50 76.0
Sopen01g001930 Solanum pennellii HOM05D000907 ORTHO05D000753 3.2e-09 65.9 50 76.0
PGSC0003DMG400032227 Solanum tuberosum HOM05D000907 ORTHO05D000753 3.2e-09 65.9 50 76.0
Aa31LG8G810 Aethionema arabicum HOM05D000907 ORTHO05D000753 4.2e-09 65.5 59 66.1
Cpa.g.sc119.73 Carica papaya HOM05D000907 ORTHO05D000753 4.2e-09 65.5 48 77.1
Eucgr.J01804 Eucalyptus grandis HOM05D000907 ORTHO05D000753 4.2e-09 65.5 50 74.0
Thhalv10020694m.g Eutrema salsugineum HOM05D000907 ORTHO05D000753 4.2e-09 65.5 50 70.0
AL3G25550 Arabidopsis lyrata HOM05D000907 ORTHO05D000753 5.5e-09 65.1 50 70.0
BcaC01g03986 Brassica carinata HOM05D000907 ORTHO05D000753 5.5e-09 65.1 50 70.0
C03p46490 Brassica napus HOM05D000907 ORTHO05D000753 5.5e-09 65.1 50 70.0
BolC3t16913H Brassica oleracea HOM05D000907 ORTHO05D000753 5.5e-09 65.1 50 70.0
Peaxi162Scf00100g00023 Petunia axillaris HOM05D000907 ORTHO05D000753 5.5e-09 65.1 50 74.0
QL01p008175 Quercus lobata HOM05D000907 ORTHO05D000753 5.5e-09 65.1 48 68.8
Rhsim13G0230800 Rhododendron simsii HOM05D000907 ORTHO05D000753 5.5e-09 65.1 50 72.0
Glyma.14G177500 Glycine max HOM05D000907 ORTHO05D000753 7.2e-09 64.7 50 70.0
Actinidia30427 Actinidia chinensis HOM05D000907 ORTHO05D000753 9.4e-09 64.3 50 70.0
arahy.Tifrunner.gnm1.ann1.GDN36T Arachis hypogaea HOM05D000907 ORTHO05D000753 9.4e-09 64.3 50 70.0
arahy.Tifrunner.gnm1.ann1.U5C4L6 Arachis hypogaea HOM05D000907 ORTHO05D000753 9.4e-09 64.3 50 70.0
SalBow3G4300 Salvia bowleyana HOM05D000907 ORTHO05D000753 9.4e-09 64.3 47 76.6
Ah.06g192960 Amaranthus hybridus HOM05D000907 ORTHO05D000753 1.2e-08 63.9 50 74.0
CiPaw.14G134400 Carya illinoinensis HOM05D000907 ORTHO05D000753 1.2e-08 63.9 46 73.9
FAN21G2517 Fragaria x ananassa HOM05D000907 ORTHO05D000753 1.2e-08 63.9 50 68.0
Psat2g068880 Pisum sativum HOM05D000907 ORTHO05D000753 1.2e-08 63.9 50 72.0
Potri.001G007200 Populus trichocarpa HOM05D000907 ORTHO05D000753 1.2e-08 63.9 47 70.2
AT3G13620 Arabidopsis thaliana HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
BcaC05g29165 Brassica carinata HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
A05p35760 Brassica napus HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
C05p54220 Brassica napus HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
BolC5t34088H Brassica oleracea HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
BraA05t22383Z Brassica rapa HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
Carub.0003s1308 Capsella rubella HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
FvH4_3g45240 Fragaria vesca HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
FAN11G0035 Fragaria x ananassa HOM05D000907 ORTHO05D000753 1.6e-08 63.5 50 68.0
MD11G1009900 Malus domestica HOM05D000907 ORTHO05D000753 1.6e-08 63.5 46 80.4
Peaxi162Scf00100g00025 Petunia axillaris HOM05D000907 ORTHO05D000753 1.6e-08 63.5 46 82.6
Sabra01G0005500 Salix brachista HOM05D000907 ORTHO05D000753 1.6e-08 63.5 47 70.2
EL10Ac4g10362 Beta vulgaris HOM05D000907 ORTHO05D000753 2.1e-08 63.2 47 68.1
Duzib170G0426 Durio zibethinus HOM05D000907 ORTHO05D000753 2.1e-08 63.2 50 70.0
Duzib170G0528 Durio zibethinus HOM05D000907 ORTHO05D000753 2.1e-08 63.2 50 70.0
Prupe.6G006400 Prunus persica HOM05D000907 ORTHO05D000753 2.1e-08 63.2 47 74.5
TPR.G24355 Trifolium pratense HOM05D000907 ORTHO05D000753 2.1e-08 63.2 47 72.3
GSVIVG01025423001 Vitis vinifera HOM05D000907 ORTHO05D000753 2.1e-08 63.2 48 68.8
CARHR088320 Cardamine hirsuta HOM05D000907 ORTHO05D000753 2.7e-08 62.8 50 68.0
Glyma.02G209400 Glycine max HOM05D000907 ORTHO05D000753 2.7e-08 62.8 48 72.9
Psat7g073440 Pisum sativum HOM05D000907 ORTHO05D000753 2.7e-08 62.8 48 66.7
THA.LOC104822672 Tarenaya hassleriana HOM05D000907 ORTHO05D000753 2.7e-08 62.8 55 65.5
Cfa009600 Carpinus fangiana HOM05D000907 ORTHO05D000753 3.6e-08 62.4 49 73.5
Cc01_g02560 Coffea canephora HOM05D000907 ORTHO05D000753 4.6e-08 62.0 48 68.8
ECA233G0943 Erigeron canadensis HOM05D000907 ORTHO05D000753 4.6e-08 62.0 50 68.0
FAN25G3666 Fragaria x ananassa HOM05D000907 ORTHO05D000753 4.6e-08 62.0 46 73.9
Phvul.008G177000 Phaseolus vulgaris HOM05D000907 ORTHO05D000753 4.6e-08 62.0 50 70.0
Rhsim13G0230900 Rhododendron simsii HOM05D000907 ORTHO05D000753 4.6e-08 62.0 50 68.0
Sp3g11820 Schrenkiella parvula HOM05D000907 ORTHO05D000753 4.6e-08 62.0 48 70.8
Thecc.09G209900 Theobroma cacao HOM05D000907 ORTHO05D000753 4.6e-08 62.0 47 72.3
Ah.06g192950 Amaranthus hybridus HOM05D000907 ORTHO05D000753 6.1e-08 61.6 47 72.3
CANSAT11G1148 Cannabis sativa HOM05D000907 ORTHO05D000753 6.1e-08 61.6 48 68.8
DCAR_030825 Daucus carota HOM05D000907 ORTHO05D000753 6.1e-08 61.6 47 76.6
Lsat_1_v5_gn_6_52101 Lactuca sativa HOM05D000907 ORTHO05D000753 6.1e-08 61.6 50 68.0
PSO339G1451 Papaver somniferum HOM05D000907 ORTHO05D000753 6.1e-08 61.6 48 68.8
PGR102G1205 Punica granatum HOM05D000907 ORTHO05D000753 6.1e-08 61.6 50 72.0
SHI55251 Sapria himalayana HOM05D000907 ORTHO05D000753 6.1e-08 61.6 47 70.2
FvH4_3g45281 Fragaria vesca HOM05D000907 ORTHO05D000753 7.9e-08 61.2 46 71.7
FAN11G1200 Fragaria x ananassa HOM05D000907 ORTHO05D000753 7.9e-08 61.2 46 71.7
FAN16G3389 Fragaria x ananassa HOM05D000907 ORTHO05D000753 7.9e-08 61.2 46 71.7
FAN21G1865 Fragaria x ananassa HOM05D000907 ORTHO05D000753 7.9e-08 61.2 46 71.7
PSO349G0227 Papaver somniferum HOM05D000907 ORTHO05D000753 7.9e-08 61.2 50 66.0
Sc06g0004270 Simmondsia chinensis HOM05D000907 ORTHO05D000753 7.9e-08 61.2 50 68.0
unitig_52.g17515 Utricularia gibba HOM05D000907 ORTHO05D000753 7.9e-08 61.2 48 77.1
BcaB06g25449 Brassica carinata HOM05D000907 ORTHO05D000753 1.0e-07 60.8 50 66.0
CSS0001437 Camellia sinensis var. sinensis HOM05D000907 ORTHO05D000753 1.0e-07 60.8 47 70.2
CiPaw.13G175100 Carya illinoinensis HOM05D000907 ORTHO05D000753 1.0e-07 60.8 49 71.4
Lsat_1_v5_gn_6_52121 Lactuca sativa HOM05D000907 ORTHO05D000753 1.0e-07 60.8 50 64.0
Lalb_Chr04g0253031 Lupinus albus HOM05D000907 ORTHO05D000753 1.0e-07 60.8 50 70.0
Manes.03G087700 Manihot esculenta HOM05D000907 ORTHO05D000753 1.0e-07 60.8 47 66.0
BcaB04g18777 Brassica carinata HOM05D000907 ORTHO05D000753 1.4e-07 60.5 50 66.0
arahy.Tifrunner.gnm1.ann1.NBN23J Arachis hypogaea HOM05D000907 ORTHO05D000753 1.8e-07 60.1 47 70.2
Ciclev10018412m.g Citrus clementina HOM05D000907 ORTHO05D000753 1.8e-07 60.1 47 70.2
Duzib170G0034 Durio zibethinus HOM05D000907 ORTHO05D000753 1.8e-07 60.1 47 72.3
Glyma.08G113400 Glycine max HOM05D000907 ORTHO05D000753 1.8e-07 60.1 47 66.0
Aqoxy1G00431 Aquilegia oxysepala HOM05D000907 ORTHO05D000753 2.3e-07 59.7 47 72.3
Lalb_Chr17g0344301 Lupinus albus HOM05D000907 ORTHO05D000753 2.3e-07 59.7 50 68.0
Manes.03G087800 Manihot esculenta HOM05D000907 ORTHO05D000753 2.3e-07 59.7 47 66.0
QL11p032767 Quercus lobata HOM05D000907 ORTHO05D000753 2.3e-07 59.7 50 70.0
unitig_8.g2959 Utricularia gibba HOM05D000907 ORTHO05D000753 2.3e-07 59.7 46 67.4
Lj2P725T6 Lonicera japonica HOM05D000907 ORTHO05D000753 3.0e-07 59.3 48 75.0
Sc09g0000190 Simmondsia chinensis HOM05D000907 ORTHO05D000753 3.0e-07 59.3 47 74.5
MSTRG.18012 Avicennia marina HOM05D000907 ORTHO05D000753 3.9e-07 58.9 47 63.8
CiPaw.14G134300 Carya illinoinensis HOM05D000907 ORTHO05D000753 3.9e-07 58.9 50 68.0
AUR62019184 Chenopodium quinoa HOM05D000907 ORTHO05D000753 3.9e-07 58.9 47 68.1
Duzib150G0540 Durio zibethinus HOM05D000907 ORTHO05D000753 3.9e-07 58.9 48 64.6
Migut.N00571 Erythranthe guttata HOM05D000907 ORTHO05D000753 3.9e-07 58.9 47 74.5
EL10Ac1g00706 Beta vulgaris HOM05D000907 ORTHO05D000753 5.1e-07 58.5 50 60.0
Medtr8g085630 Medicago truncatula HOM05D000907 ORTHO05D000753 5.1e-07 58.5 47 63.8
vmacro22752 Vaccinium macrocarpon HOM05D000907 ORTHO05D000753 5.1e-07 58.5 48 64.6
AUR62000014 Chenopodium quinoa HOM05D000907 ORTHO05D000753 6.7e-07 58.2 46 67.4
PGR119G1250 Punica granatum HOM05D000907 ORTHO05D000753 6.7e-07 58.2 48 68.8
TWI60G0491 Tripterygium wilfordii HOM05D000907 ORTHO05D000753 6.7e-07 58.2 47 66.0
Rhsim12G0004400 Rhododendron simsii HOM05D000907 ORTHO05D000753 8.8e-07 57.8 47 68.1
Sed0026771 Sechium edule HOM05D000907 ORTHO05D000753 8.8e-07 57.8 50 66.0
VMungo0647G0950 Vigna mungo HOM05D000907 ORTHO05D000753 8.8e-07 57.8 48 66.7
MBI01_g47227_MAGBIO Magnolia biondii HOM05D000907 ORTHO05D000753 1.1e-06 57.4 50 60.0
RcHm_v2.0_Chr5g0082951 Rosa chinensis HOM05D000907 ORTHO05D000753 1.1e-06 57.4 46 69.6
HanXRQChr02g0056901 Helianthus annuus HOM05D000907 ORTHO05D000753 1.5e-06 57.0 50 58.0
CDE04G1446 Ceratophyllum demersum HOM05D000907 ORTHO05D000753 2.0e-06 56.6 48 62.5
COL.COLO4_35019 Corchorus olitorius HOM05D000907 ORTHO05D000753 2.0e-06 56.6 47 63.8
MELO3C015082.2 Cucumis melo HOM05D000907 ORTHO05D000753 2.0e-06 56.6 50 62.0
PGR102G1860 Punica granatum HOM05D000907 ORTHO05D000753 2.0e-06 56.6 47 66.0
PGR119G1139 Punica granatum HOM05D000907 ORTHO05D000753 2.0e-06 56.6 44 68.2
QL01p008159 Quercus lobata HOM05D000907 ORTHO05D000753 2.0e-06 56.6 50 64.0
DCAR_026675 Daucus carota HOM05D000907 ORTHO05D000753 2.5e-06 56.2 47 66.0
HanXRQChr02g0056841 Helianthus annuus HOM05D000907 ORTHO05D000753 2.5e-06 56.2 49 59.2
Phvul.002G235600 Phaseolus vulgaris HOM05D000907 ORTHO05D000753 2.5e-06 56.2 47 61.7
CsaV3_1G043680 Cucumis sativus L. HOM05D000907 ORTHO05D000753 3.3e-06 55.8 50 62.0
Glyma.05G155500 Glycine max HOM05D000907 ORTHO05D000753 3.3e-06 55.8 47 61.7
PSO675G8970 Papaver somniferum HOM05D000907 ORTHO05D000753 3.3e-06 55.8 48 60.4
ClCG03G012320 Citrullus lanatus HOM05D000907 ORTHO05D000753 4.3e-06 55.5 50 60.0
Lalb_Chr08g0237731 Lupinus albus HOM05D000907 ORTHO05D000753 4.3e-06 55.5 47 66.0
Lalb_Chr13g0295001 Lupinus albus HOM05D000907 ORTHO05D000753 4.3e-06 55.5 48 58.3
MELO3C014206.2 Cucumis melo HOM05D000907 ORTHO05D000753 5.7e-06 55.1 48 62.5
FAN21G1326 Fragaria x ananassa HOM05D000907 ORTHO05D000753 5.7e-06 55.1 45 71.1
FAN25G2190 Fragaria x ananassa HOM05D000907 ORTHO05D000753 7.4e-06 54.7 45 68.9
Lj4g0009592 Lotus japonicus HOM05D000907 ORTHO05D000753 7.4e-06 54.7 47 59.6
Lj4g0009610 Lotus japonicus HOM05D000907 ORTHO05D000753 7.4e-06 54.7 47 59.6
Eucgr.B03617 Eucalyptus grandis HOM05D000907 ORTHO05D000753 9.7e-06 54.3 47 61.7
Gohir.D08G089500 Gossypium hirsutum HOM05D000907 ORTHO05D000753 9.7e-06 54.3 46 63.0
Gorai.004G094200 Gossypium raimondii HOM05D000907 ORTHO05D000753 9.7e-06 54.3 46 63.0


User provided reference genes

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