Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010122 Solanum tuberosum HOM05D006494 ORTHO05D007787 6.0e-141 504.2 261 100.0
Sopen03g004010 Solanum pennellii HOM05D006494 ORTHO05D007787 6.8e-129 464.2 261 91.6
Nitab4.5_0000084g0320 Nicotiana tabacum HOM05D006494 ORTHO05D007787 1.4e-94 350.1 260 73.1
Solyc03g025160.4 Solanum lycopersicum HOM05D006494 ORTHO05D007787 1.3e-92 343.6 193 94.3
Peaxi162Scf00444g00014 Petunia axillaris HOM05D006494 ORTHO05D007787 8.2e-74 281.2 260 64.2
Nitab4.5_0000572g0070 Nicotiana tabacum HOM05D006494 ORTHO05D007787 3.2e-62 242.7 246 60.6
Dinv28397 Davidia involucrata HOM05D006494 ORTHO05D007787 2.7e-53 213.0 266 51.5
Peaxi162Scf00618g00753 Petunia axillaris HOM05D006494 ORTHO05D007787 4.7e-53 212.2 296 49.0
PGSC0003DMG400029922 Solanum tuberosum HOM05D006494 ORTHO05D007787 5.2e-52 208.8 244 54.1
PGSC0003DMG400017033 Solanum tuberosum HOM05D006494 ORTHO05D007787 1.6e-48 197.2 133 84.2
Rhsim09G0200100 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.2e-43 181.0 258 46.1
Rhsim09G0199800 Rhododendron simsii HOM05D006494 ORTHO05D007787 4.4e-43 179.1 258 45.3
vmacro09820 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 1.3e-42 177.6 258 47.3
Actinidia20864 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.4e-41 173.3 260 45.4
Hma1.2p1_0327F.1_g126290 Hydrangea macrophylla HOM05D006494 ORTHO05D007787 1.6e-40 170.6 257 45.5
MSTRG.8473 Avicennia marina HOM05D006494 ORTHO05D007787 1.3e-39 167.5 258 46.9
Cc02_g02520 Coffea canephora HOM05D006494 ORTHO05D007787 2.9e-39 166.4 266 45.5
Actinidia34147 Actinidia chinensis HOM05D006494 ORTHO05D007787 3.8e-39 166.0 259 43.6
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 4.7e-37 159.1 211 49.8
vmacro06639 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 1.0e-36 157.9 255 46.3
Migut.F01093 Erythranthe guttata HOM05D006494 ORTHO05D007787 1.4e-36 157.5 247 43.7
DCAR_020265 Daucus carota HOM05D006494 ORTHO05D007787 4.1e-33 146.0 259 44.0
TWI39G0535 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 4.1e-33 146.0 266 38.7
Oeu006795.1 Olea europaea HOM05D006494 ORTHO05D007787 2.0e-32 143.7 254 43.3
Gohir.A02G091800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 2.7e-32 143.3 262 38.2
TWI23G1164 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 4.6e-32 142.5 251 41.4
Rhsim03G0190000 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.7e-31 140.6 167 51.5
Manes.06G151500 Manihot esculenta HOM05D006494 ORTHO05D007787 3.9e-31 139.4 234 41.9
Gohir.D02G108900 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.9e-30 137.1 264 37.9
Gorai.005G124800 Gossypium raimondii HOM05D006494 ORTHO05D007787 1.6e-29 134.0 264 37.5
Oeu022606.1 Olea europaea HOM05D006494 ORTHO05D007787 2.1e-29 133.7 254 40.9
SalBow2G1868 Salvia bowleyana HOM05D006494 ORTHO05D007787 2.1e-29 133.7 246 43.5
SalBow2G2185 Salvia bowleyana HOM05D006494 ORTHO05D007787 2.1e-29 133.7 246 43.5
Actinidia08572 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.8e-29 133.3 167 50.3
Haze_00032 Corylus avellana HOM05D006494 ORTHO05D007787 3.6e-29 132.9 272 39.3
SGA_v2.0_scaffold10G05304 Striga asiatica HOM05D006494 ORTHO05D007787 3.6e-29 132.9 258 39.5
CiPaw.05G263300 Carya illinoinensis HOM05D006494 ORTHO05D007787 1.0e-28 131.3 217 42.9
Duzib151G1204 Durio zibethinus HOM05D006494 ORTHO05D007787 1.8e-28 130.6 247 37.7
Thecc.04G169800 Theobroma cacao HOM05D006494 ORTHO05D007787 5.2e-28 129.0 261 36.8
Cfa016278 Carpinus fangiana HOM05D006494 ORTHO05D007787 6.8e-28 128.6 271 38.0
Ciclev10005709m.g Citrus clementina HOM05D006494 ORTHO05D007787 3.4e-27 126.3 258 36.4
Duzib268G1872 Durio zibethinus HOM05D006494 ORTHO05D007787 7.5e-27 125.2 261 37.2
ECA232G1863 Erigeron canadensis HOM05D006494 ORTHO05D007787 7.5e-27 125.2 267 40.8
QL09p013118 Quercus lobata HOM05D006494 ORTHO05D007787 7.5e-27 125.2 263 39.5
CSS0030697 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 9.8e-27 124.8 164 50.6
ECA232G4003 Erigeron canadensis HOM05D006494 ORTHO05D007787 1.7e-26 124.0 244 41.8
HanXRQChr09g0252471 Helianthus annuus HOM05D006494 ORTHO05D007787 4.9e-26 122.5 257 39.3
CSS0049923 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 1.9e-25 120.6 258 38.0
TWI39G0536 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.2e-24 117.9 262 35.1
PGR142G1234 Punica granatum HOM05D006494 ORTHO05D007787 1.6e-24 117.5 275 37.5
Migut.F00309 Erythranthe guttata HOM05D006494 ORTHO05D007787 6.0e-24 115.5 261 37.2
Eucgr.K00289 Eucalyptus grandis HOM05D006494 ORTHO05D007787 3.0e-23 113.2 269 37.5
COL.COLO4_28030 Corchorus olitorius HOM05D006494 ORTHO05D007787 3.9e-23 112.8 237 36.7
Thecc.03G182400 Theobroma cacao HOM05D006494 ORTHO05D007787 8.6e-23 111.7 267 35.6
TAR629G2733 Trochodendron aralioides HOM05D006494 ORTHO05D007787 3.3e-22 109.8 221 39.8
Manes.14G023400 Manihot esculenta HOM05D006494 ORTHO05D007787 5.6e-22 109.0 221 38.5
RcHm_v2.0_Chr3g0482351 Rosa chinensis HOM05D006494 ORTHO05D007787 2.8e-21 106.7 263 35.4
Sopen06g011990 Solanum pennellii HOM05D006494 ORTHO05D007787 3.6e-21 106.3 155 45.2
Cpa.g.sc107.95 Carica papaya HOM05D006494 ORTHO05D007787 4.7e-21 105.9 268 36.2
MD12G1079700 Malus domestica HOM05D006494 ORTHO05D007787 4.7e-21 105.9 260 36.9
Ciclev10030388m.g Citrus clementina HOM05D006494 ORTHO05D007787 6.2e-21 105.5 258 35.3
Lsat_1_v5_gn_9_57501 Lactuca sativa HOM05D006494 ORTHO05D007787 6.2e-21 105.5 259 34.7
Prupe.7G058200 Prunus persica HOM05D006494 ORTHO05D007787 6.2e-21 105.5 240 38.8
Gohir.A10G141700 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.8e-20 104.0 261 35.2
Gorai.011G137900 Gossypium raimondii HOM05D006494 ORTHO05D007787 1.8e-20 104.0 261 34.5
unitig_46.g18800 Utricularia gibba HOM05D006494 ORTHO05D007787 6.8e-20 102.1 196 40.8
Gohir.D10G124800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.2e-19 101.3 248 34.7
Nn6g33336 Nelumbo nucifera HOM05D006494 ORTHO05D007787 1.2e-19 101.3 270 37.4
MD14G1075900 Malus domestica HOM05D006494 ORTHO05D007787 4.9e-18 95.9 256 35.5
VMungo0720G0554 Vigna mungo HOM05D006494 ORTHO05D007787 2.4e-17 93.6 270 33.3
Phvul.007G073600 Phaseolus vulgaris HOM05D006494 ORTHO05D007787 3.2e-17 93.2 253 35.2
RcHm_v2.0_Chr3g0482771 Rosa chinensis HOM05D006494 ORTHO05D007787 5.4e-17 92.4 261 31.8
Sed0015630 Sechium edule HOM05D006494 ORTHO05D007787 7.1e-17 92.0 258 33.7
ClCG05G008270 Citrullus lanatus HOM05D006494 ORTHO05D007787 1.6e-16 90.9 258 32.9
COL.COLO4_10079 Corchorus olitorius HOM05D006494 ORTHO05D007787 3.0e-15 86.7 237 35.0
TPR.G26961 Trifolium pratense HOM05D006494 ORTHO05D007787 1.1e-14 84.7 267 34.1
Glyma.10G231900 Glycine max HOM05D006494 ORTHO05D007787 2.5e-14 83.6 275 33.5
Ca_10732_v3 Cicer arietinum L. HOM05D006494 ORTHO05D007787 3.3e-14 83.2 277 32.1
MD07G1041300 Malus domestica HOM05D006494 ORTHO05D007787 4.3e-14 82.8 257 32.7
Lalb_Chr21g0305211 Lupinus albus HOM05D006494 ORTHO05D007787 2.8e-13 80.1 234 35.5
Glyma.20G162200 Glycine max HOM05D006494 ORTHO05D007787 8.1e-13 78.6 272 30.9
FAN08G0782 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.8e-12 77.4 159 37.1
FAN13G0811 Fragaria x ananassa HOM05D006494 ORTHO05D007787 4.0e-12 76.3 158 37.3
CsaV3_3G017370 Cucumis sativus L. HOM05D006494 ORTHO05D007787 6.8e-12 75.5 261 31.0
SHI13763 Sapria himalayana HOM05D000481 ORTHO05D003804 1.2e-11 74.7 228 32.0
FAN14G1471 Fragaria x ananassa HOM05D006494 ORTHO05D007787 2.0e-11 73.9 196 33.2
PSO478G4343 Papaver somniferum HOM05D006494 ORTHO05D007787 2.0e-11 73.9 261 31.8
FvH4_6g37300 Fragaria vesca HOM05D006494 ORTHO05D007787 3.4e-11 73.2 196 33.2
Sed0010736 Sechium edule HOM05D006494 ORTHO05D007787 3.4e-11 73.2 259 31.3
FAN18G4076 Fragaria x ananassa HOM05D006494 ORTHO05D007787 7.6e-11 72.0 159 37.1
PSO782G5664 Papaver somniferum HOM05D006494 ORTHO05D007787 9.9e-11 71.6 251 32.3
MELO3C018639.2 Cucumis melo HOM05D006494 ORTHO05D007787 1.3e-10 71.2 263 30.4
Prupe.7G043900 Prunus persica HOM05D006494 ORTHO05D007787 1.3e-10 71.2 209 31.6
FvH4_5g32440 Fragaria vesca HOM05D006494 ORTHO05D007787 1.7e-10 70.9 159 36.5
FAN02G3807 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.7e-10 70.9 193 32.1
CiPaw.12G091000 Carya illinoinensis HOM05D006494 ORTHO05D007787 2.9e-10 70.1 268 26.1
FAN05G4065 Fragaria x ananassa HOM05D006494 ORTHO05D007787 2.9e-10 70.1 196 32.7
PSO063G3044 Papaver somniferum HOM05D006494 ORTHO05D007787 2.9e-10 70.1 236 32.6
arahy.Tifrunner.gnm1.ann1.HAQV4X Arachis hypogaea HOM05D006494 ORTHO05D007787 3.8e-10 69.7 208 33.2
Actinidia03131 Actinidia chinensis HOM05D006494 ORTHO05D007787 6.4e-10 68.9 115 43.5
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 6.4e-10 68.9 209 32.1
Lj5g0022841 Lotus japonicus HOM05D006494 ORTHO05D007787 6.4e-10 68.9 280 27.5
Lalb_Chr02g0144041 Lupinus albus HOM05D006494 ORTHO05D007787 6.4e-10 68.9 263 30.4
arahy.Tifrunner.gnm1.ann1.J3K5XQ Arachis hypogaea HOM05D006494 ORTHO05D007787 1.9e-09 67.4 208 32.7
FvH4_6g24000 Fragaria vesca HOM05D006494 ORTHO05D007787 5.4e-09 65.9 174 31.6
FAN14G4923 Fragaria x ananassa HOM05D006494 ORTHO05D007787 9.2e-09 65.1 174 31.0
FAN05G2781 Fragaria x ananassa HOM05D000001 ORTHO05D009295 3.5e-08 63.2 197 29.4
Potri.017G113501 Populus trichocarpa HOM05D006494 ORTHO05D007787 1.0e-07 61.6 149 36.2
Psat0s2528g0040 Pisum sativum HOM05D006494 ORTHO05D007787 1.7e-07 60.8 197 27.4
Potri.004G101600 Populus trichocarpa HOM05D006494 ORTHO05D007787 6.6e-07 58.9 131 35.1
BolC3t16943H Brassica oleracea HOM05D007739 ORTHO05D009838 8.6e-07 58.5 185 34.1
A03p38660 Brassica napus HOM05D007739 ORTHO05D009838 1.1e-06 58.2 161 34.8
BraA03t13013Z Brassica rapa HOM05D007739 ORTHO05D009838 1.1e-06 58.2 161 34.8
BcaC01g03953 Brassica carinata HOM05D007739 ORTHO05D009838 1.9e-06 57.4 185 33.5
AL3G26440 Arabidopsis lyrata HOM05D007739 ORTHO05D009838 3.3e-06 56.6 152 31.6
C03p46780 Brassica napus HOM05D007739 ORTHO05D009838 3.3e-06 56.6 185 33.5
Nitab4.5_0001095g0030 Nicotiana tabacum HOM05D007739 ORTHO05D009838 9.6e-06 55.1 81 44.4


User provided reference genes

Program Settings