Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.3e-162 576.6 348 100.0
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.7e-138 495.4 353 87.5
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.3e-131 472.2 351 75.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 8.2e-130 467.6 352 73.9
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 5.3e-129 464.9 349 72.5
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 5.3e-129 464.9 348 71.3
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 5.9e-128 461.5 348 69.5
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 3.8e-127 458.8 348 72.4
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 2.7e-125 452.6 350 70.9
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.7e-125 451.8 348 69.5
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.4e-124 450.3 348 64.9
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-124 449.1 348 68.1
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 7.5e-123 444.5 348 76.7
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 7.5e-123 444.5 348 64.7
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.7e-122 443.4 349 74.5
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 2.8e-122 442.6 347 62.5
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.7e-122 442.2 348 63.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 4.8e-122 441.8 344 75.3
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.3e-122 441.0 348 68.4
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.1e-121 440.7 352 63.9
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.4e-121 440.3 348 75.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.8e-121 439.9 349 66.8
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.0e-121 438.0 349 65.9
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 9.1e-121 437.6 348 68.4
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.7e-120 436.0 348 67.2
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 3.5e-120 435.6 351 76.1
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.5e-120 435.3 349 67.6
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 5.9e-120 434.9 348 70.1
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 7.7e-120 434.5 348 64.4
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.3e-119 433.7 344 64.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.7e-119 433.3 348 69.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.7e-119 433.3 361 80.1
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.2e-119 433.0 348 62.4
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.2e-119 433.0 350 62.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 3.8e-119 432.2 350 64.0
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.0e-119 431.8 341 67.2
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 6.5e-119 431.4 349 70.5
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 8.5e-119 431.0 349 62.8
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.1e-118 430.6 348 71.8
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.5e-118 430.3 347 64.6
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 3.2e-118 429.1 347 64.6
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 4.2e-118 428.7 351 75.5
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 4.2e-118 428.7 348 63.2
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 4.2e-118 428.7 348 67.2
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 5.5e-118 428.3 348 64.9
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.2e-118 427.9 344 62.8
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 7.2e-118 427.9 348 63.5
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.6e-117 426.8 348 72.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.6e-117 426.8 347 62.8
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.6e-117 426.8 348 60.3
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.7e-117 426.0 347 62.2
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.6e-117 425.6 349 63.9
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.7e-117 425.2 348 75.3
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.0e-116 424.1 350 65.7
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.8e-116 423.3 349 65.9
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 3.0e-116 422.5 349 66.5
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.0e-116 422.2 360 61.1
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 5.2e-116 421.8 349 61.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.2e-116 421.8 348 66.4
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.8e-116 421.4 348 63.2
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 6.8e-116 421.4 348 71.0
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-115 420.6 348 65.8
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.5e-115 420.2 344 64.2
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.4e-115 419.1 349 62.8
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.4e-115 419.1 349 62.8
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 4.4e-115 418.7 348 64.1
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.4e-115 418.7 348 69.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 5.7e-115 418.3 348 67.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 5.7e-115 418.3 348 67.8
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 9.8e-115 417.5 349 66.8
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.3e-114 417.2 348 68.4
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-114 417.2 344 66.0
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.2e-114 416.4 350 62.0
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.2e-114 416.4 346 61.0
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 3.7e-114 415.6 345 62.6
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.9e-114 415.2 348 61.5
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 4.9e-114 415.2 348 64.7
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 2.4e-113 412.9 348 69.3
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 4.1e-113 412.1 348 60.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 5.4e-113 411.8 351 72.1
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.7e-112 409.5 348 67.2
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.7e-112 409.5 349 66.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.5e-112 408.7 349 70.5
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.7e-112 407.9 348 67.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.0e-111 407.5 343 65.6
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.3e-111 407.1 353 66.3
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.7e-111 406.8 373 57.9
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 2.9e-111 406.0 348 63.8
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.0e-111 405.2 348 63.8
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 6.6e-111 404.8 348 62.6
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 6.6e-111 404.8 348 64.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 6.6e-111 404.8 348 62.1
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.5e-110 403.7 343 64.4
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.5e-110 403.7 351 69.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.9e-110 403.3 347 62.5
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.9e-110 403.3 347 70.0
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 5.6e-110 401.7 347 62.5
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 7.3e-110 401.4 348 62.4
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.1e-109 399.8 350 60.3
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 2.1e-109 399.8 343 63.0
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 4.7e-109 398.7 344 62.5
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 6.1e-109 398.3 363 57.6
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.4e-108 397.1 347 59.7
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 3.0e-108 396.0 348 61.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.0e-107 393.3 354 61.0
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 2.6e-107 392.9 369 56.9
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.3e-106 390.6 348 60.3
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 6.4e-106 388.3 348 59.8
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.8e-105 386.7 433 63.5
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 3.2e-105 386.0 348 57.2
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 7.0e-105 384.8 448 49.1
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 7.8e-104 381.3 364 57.1
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 3.9e-103 379.0 352 54.8
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.5e-102 376.3 329 58.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.6e-101 373.6 344 56.7
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.8e-100 370.2 342 54.1
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.2e-98 363.2 352 53.7
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 4.1e-97 359.0 351 51.9
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.0e-97 358.2 351 57.3
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.0e-96 355.1 309 61.2
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.0e-95 354.4 347 51.9
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 5.0e-95 352.1 302 70.5
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.3e-94 349.0 344 54.9
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 7.3e-94 348.2 348 51.7
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.6e-93 347.1 306 63.1
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 4.7e-93 345.5 350 50.0
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 6.2e-93 345.1 256 68.4
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 6.2e-93 345.1 341 52.5
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.1e-92 344.4 294 65.6
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 8.9e-92 341.3 345 53.0
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 2.2e-90 336.7 347 51.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.1e-89 334.3 291 64.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.9e-89 333.6 340 51.8
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 2.4e-89 333.2 293 68.9
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.2e-89 332.8 348 54.3
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 4.1e-89 332.4 348 48.9
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.6e-87 325.1 299 57.9
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.3e-82 310.8 300 66.3
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 6.4e-82 308.5 291 66.7
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.1e-81 307.8 286 67.5
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.7e-74 283.9 172 80.8
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.3e-71 273.5 343 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 5.1e-71 272.3 338 41.4
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.1e-69 266.9 343 39.7
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 6.2e-69 265.4 280 54.3
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.0e-67 260.4 245 58.4
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.6e-67 260.0 260 53.8
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 8.4e-66 255.0 246 54.9
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.9e-65 253.8 246 65.9
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.6e-64 250.8 246 70.3
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 2.1e-64 250.4 248 59.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 6.0e-64 248.8 246 63.0
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 7.9e-64 248.4 340 46.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 3.3e-62 243.0 145 77.2
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-62 242.7 242 56.2
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.2e-61 238.8 130 89.2
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 8.1e-61 238.4 341 37.0
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 2.6e-59 233.4 226 58.4
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.9e-58 229.9 263 45.6
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.6e-56 222.6 257 47.1
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.8e-50 203.0 256 42.2
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 5.7e-46 189.1 233 44.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-45 188.0 120 75.0
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 3.8e-42 176.4 102 79.4
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 6.3e-37 159.1 348 33.0
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.2e-33 146.7 128 61.7
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.4e-28 131.3 102 62.7
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 8.5e-26 122.1 71 77.5
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-21 108.2 70 72.9
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-21 107.8 70 71.4
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 5.9e-19 99.4 55 72.7
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-17 94.7 54 85.2
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 3.7e-13 80.1 106 32.1
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 5.5e-09 66.2 133 33.1
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 8.0e-08 62.4 52 57.7


User provided reference genes

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