Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 4.9e-131 471.1 229 100.0
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.6e-113 411.4 229 88.2
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.2e-83 312.8 177 87.0
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 9.4e-82 307.4 213 70.0
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.6e-81 306.6 212 70.8
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.6e-81 306.6 212 70.8
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 2.1e-81 306.2 212 69.3
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 2.1e-81 306.2 213 70.0
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-80 303.1 212 69.3
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.3e-80 302.8 213 69.0
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 8.8e-80 300.8 212 69.3
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 4.4e-79 298.5 192 74.0
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.7e-78 296.6 213 67.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 2.2e-78 296.2 213 67.6
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 4.8e-78 295.0 225 64.4
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.3e-78 294.7 213 68.1
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-77 293.9 213 69.0
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.0e-76 289.7 212 65.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.5e-76 288.5 213 68.5
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 5.9e-76 288.1 213 65.7
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 5.9e-76 288.1 213 66.2
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.0e-75 287.3 213 68.5
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.2e-75 286.2 213 65.3
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 2.9e-75 285.8 213 66.2
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.8e-75 285.4 213 66.2
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 5.0e-75 285.0 222 65.3
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 5.0e-75 285.0 213 66.7
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 8.5e-75 284.3 213 64.8
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.1e-74 283.9 213 64.8
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.9e-74 283.1 213 65.3
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 2.5e-74 282.7 213 66.2
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 4.2e-74 282.0 214 65.9
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 5.5e-74 281.6 214 66.4
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 9.4e-74 280.8 214 65.9
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 9.4e-74 280.8 213 64.3
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.2e-73 280.4 213 63.8
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.6e-73 280.0 215 64.7
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.1e-73 279.6 212 63.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.7e-73 279.3 214 66.4
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 3.6e-73 278.9 212 64.2
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.6e-73 278.9 213 64.8
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.4e-72 276.9 213 64.8
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 1.8e-72 276.6 214 66.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 3.9e-72 275.4 213 62.4
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 5.2e-72 275.0 215 62.8
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 6.7e-72 274.6 214 65.4
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 8.8e-72 274.2 214 65.9
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.1e-71 273.9 215 62.3
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 2.0e-71 273.1 215 62.3
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 2.6e-71 272.7 212 64.2
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.6e-71 272.7 214 63.6
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.6e-71 272.7 214 63.6
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 3.3e-71 272.3 215 65.6
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.3e-71 272.3 203 66.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.4e-71 271.9 212 61.8
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 7.4e-71 271.2 197 68.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.4e-71 271.2 215 65.1
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.7e-71 270.8 215 64.7
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 9.7e-71 270.8 214 61.2
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 9.7e-71 270.8 215 65.1
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 9.7e-71 270.8 212 64.6
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.2e-70 269.6 215 65.1
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 2.8e-70 269.2 213 61.0
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.8e-69 266.5 213 62.4
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 3.1e-69 265.8 213 62.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.1e-69 265.4 216 64.4
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.2e-68 263.8 213 62.0
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 3.5e-68 262.3 213 62.0
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.5e-68 262.3 232 60.3
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 7.7e-68 261.2 213 62.4
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.7e-68 261.2 212 61.3
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.3e-67 260.4 192 65.6
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 2.2e-67 259.6 212 62.3
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.9e-67 259.2 213 61.0
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 8.5e-67 257.7 191 65.4
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 8.5e-67 257.7 196 66.8
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.2e-66 255.4 168 73.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 9.4e-66 254.2 215 58.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 9.4e-66 254.2 214 58.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 3.6e-65 252.3 215 58.6
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.0e-65 251.1 192 64.6
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.0e-64 250.8 214 57.9
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.4e-64 250.4 212 58.0
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.4e-64 250.4 213 60.6
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.8e-64 250.0 213 60.6
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 3.0e-64 249.2 215 57.7
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.0e-64 249.2 231 57.1
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 4.0e-64 248.8 213 59.2
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 5.2e-64 248.4 193 65.8
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 6.8e-64 248.1 193 65.8
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 8.8e-64 247.7 194 63.9
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 2.6e-63 246.1 193 64.8
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.4e-63 245.7 213 58.7
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 5.7e-63 245.0 216 57.4
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 5.7e-63 245.0 216 57.4
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.7e-63 245.0 195 65.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 7.5e-63 244.6 193 64.2
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.7e-62 243.4 203 60.1
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.7e-62 243.4 218 58.3
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.2e-62 243.0 215 58.6
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.2e-62 243.0 215 58.6
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 2.2e-62 243.0 205 59.5
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.8e-62 242.7 215 58.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 6.3e-62 241.5 215 58.6
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.1e-61 240.7 190 64.2
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.1e-61 238.8 193 62.7
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-60 237.3 193 64.8
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 2.0e-60 236.5 215 57.7
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 5.9e-60 235.0 212 53.8
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.9e-60 235.0 293 46.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.0e-59 234.2 169 66.9
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 2.9e-59 232.6 192 62.0
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-58 230.7 214 57.5
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-58 230.7 214 57.5
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 3.2e-58 229.2 169 66.9
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.6e-57 225.7 210 56.2
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.0e-56 224.2 211 50.2
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 5.7e-55 218.4 183 60.7
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 7.5e-55 218.0 282 45.0
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.2e-54 216.5 215 54.9
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 8.3e-54 214.5 218 51.8
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 8.3e-54 214.5 218 51.8
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 8.3e-54 214.5 218 51.8
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.6e-49 200.3 216 48.6
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.8e-49 199.5 215 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.0e-48 196.1 217 47.0
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.2e-47 194.1 210 47.6
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.0e-47 193.4 180 55.0
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 4.4e-47 192.2 155 65.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 5.7e-47 191.8 151 63.6
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 4.9e-46 188.7 214 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.0e-44 183.3 191 50.8
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 3.5e-44 182.6 188 52.7
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.5e-39 167.2 181 47.5
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 2.5e-34 149.8 218 39.9
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.8e-32 143.7 145 52.4
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.3e-30 137.5 93 67.7
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.4e-29 132.1 140 49.3
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 5.4e-29 132.1 139 51.1
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 2.7e-28 129.8 218 33.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 3.9e-27 125.9 228 30.7
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-26 123.2 98 63.3
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.2e-22 110.2 84 64.3
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 4.9e-22 109.0 135 50.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.4e-21 107.5 208 31.7
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 3.9e-19 99.4 84 54.8
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.0e-15 87.0 88 47.7
CAN.G39.28 Capsicum annuum HOM05D001081 ORTHO05D024763 9.6e-10 68.2 49 67.3
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.3e-09 67.8 79 54.4
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 4.4e-07 59.3 205 24.9


User provided reference genes

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