Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 0.0e+00 2237.2 1141 100.0
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2051.6 1171 90.4
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1785.4 1172 79.6
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1679.5 1183 74.7
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1660.2 1175 74.1
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1565.1 1175 70.2
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 6.1e-206 722.2 1210 37.9
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 2.2e-179 634.0 1192 36.8
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 2.1e-174 617.5 1183 34.9
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 3.3e-167 593.6 849 41.3
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 9.8e-164 582.0 1186 33.6
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 8.6e-160 568.9 1238 33.1
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.9e-155 553.9 1182 33.1
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 9.2e-154 548.9 1206 33.3
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 8.4e-147 525.8 1254 32.0
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 1.0e-144 518.8 1223 30.9
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 3.0e-144 517.3 1195 31.5
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 3.0e-144 517.3 1212 31.3
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 8.1e-142 509.2 866 37.5
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 5.2e-141 506.5 1218 31.5
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 7.6e-140 502.7 1187 32.0
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 2.9e-139 500.7 1216 31.8
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 4.2e-138 496.9 1201 30.3
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 5.4e-138 496.5 1215 30.4
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 4.6e-137 493.4 1103 32.5
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 3.9e-136 490.3 1181 31.8
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 1.5e-132 478.4 1220 29.5
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.6e-132 477.6 1219 30.3
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.3e-131 475.3 1212 30.2
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 6.4e-131 473.0 1190 30.0
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 1.1e-130 472.2 1212 30.2
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.2e-129 468.8 1214 30.2
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 1.3e-126 458.8 1218 30.0
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 1.6e-126 458.4 1179 29.7
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.4e-125 455.3 929 33.7
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 2.0e-124 451.4 1208 30.4
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 1.9e-122 444.9 1203 28.7
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 7.4e-119 433.0 1208 29.0
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.6e-118 431.8 1093 30.7
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 2.1e-118 431.4 1204 28.6
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 5.8e-116 423.3 1185 28.8
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 3.2e-114 417.5 1218 29.2
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 6.0e-113 413.3 1208 28.3
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 3.3e-111 407.5 1208 28.9
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 2.0e-108 398.3 1214 28.6
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 7.6e-108 396.4 1240 28.4
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 2.9e-107 394.4 1240 27.5
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 3.2e-106 391.0 1194 28.4
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 6.1e-105 386.7 1199 27.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 1.3e-104 385.6 1196 26.4
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 8.7e-104 382.9 1234 27.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 1.6e-97 362.1 1228 27.2
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 4.7e-97 360.5 1073 29.3
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.0e-96 359.4 1203 27.4
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 2.3e-96 358.2 1251 26.9
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 3.9e-96 357.5 1138 27.2
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 2.2e-94 351.7 1191 27.7
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 3.1e-93 347.8 1204 26.1
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 2.6e-92 344.7 1191 26.9
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 5.0e-91 340.5 1225 26.4
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.2e-89 335.9 829 30.4
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 2.0e-87 328.6 895 28.6
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 2.2e-86 325.1 1204 24.8
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 1.6e-84 318.9 1206 26.1
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 5.0e-83 313.9 1183 26.9
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 1.5e-82 312.4 1205 27.0
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 1.5e-82 312.4 1210 26.6
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 1.0e-80 306.2 1191 26.8
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 8.8e-80 303.1 1220 26.1
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 9.7e-79 299.7 1180 26.1
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 1.3e-78 299.3 1223 25.1
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.7e-78 298.9 883 28.1
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 4.8e-78 297.4 1182 26.7
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 1.1e-77 296.2 1198 25.9
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 1.1e-77 296.2 1198 25.9
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 2.4e-77 295.0 1182 26.1
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 5.9e-76 290.4 1189 26.0
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 1.3e-75 289.3 1181 25.7
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 1.7e-70 272.3 915 26.2
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 8.3e-70 270.0 1219 24.7
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 8.0e-65 253.4 1197 23.6
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 4.9e-62 244.2 835 27.7
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 1.4e-61 242.7 1134 24.7
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 6.1e-57 227.3 1250 24.2
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 1.8e-48 199.1 783 24.4
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 1.1e-45 189.9 1117 23.5
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 2.0e-39 169.1 619 26.8
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 4.4e-39 167.9 1004 23.6
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 1.7e-38 166.0 861 24.4
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 4.7e-33 147.9 391 29.4
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 2.7e-28 132.1 678 20.9
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 9.6e-26 123.6 182 38.5
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 6.4e-22 110.9 757 23.1
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 3.2e-21 108.6 321 28.7
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 3.5e-20 105.1 203 32.5
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 2.1e-17 95.9 128 40.6
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 1.5e-15 89.7 661 21.5
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 1.3e-14 86.7 121 40.5
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.7e-14 86.3 227 27.3
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 2.2e-14 85.9 307 27.0
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 1.1e-13 83.6 172 28.5
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 7.1e-13 80.9 115 40.9
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 9.3e-13 80.5 225 23.6
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.6e-12 79.7 322 26.1
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 1.8e-11 76.3 248 25.4
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.5e-10 73.2 456 21.7
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 2.0e-07 62.8 194 28.4
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 2.6e-07 62.4 477 22.9


User provided reference genes

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