Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1674.4 804 100.0
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1654.0 804 98.6
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1565.8 804 92.8
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1518.4 853 85.7
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1499.6 804 89.3
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1274.6 807 75.6
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1248.0 804 73.3
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1245.0 823 72.3
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1244.2 807 73.6
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1235.3 807 72.9
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1221.8 805 71.9
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1210.3 842 69.8
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1208.7 807 71.1
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1206.8 806 72.0
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1191.0 805 70.8
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1184.9 807 70.1
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1182.2 807 70.6
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1181.0 807 70.5
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1180.2 803 69.9
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1178.3 807 69.4
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1178.3 807 70.3
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1174.1 804 70.1
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1168.3 808 69.2
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1167.1 841 66.5
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1166.0 807 68.9
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1164.8 804 69.2
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1162.9 807 68.8
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1162.1 804 69.8
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1161.7 804 66.8
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1161.7 807 68.8
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1161.7 809 69.5
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1161.4 808 68.8
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1160.6 807 68.8
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1159.1 807 68.5
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1156.7 807 68.6
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1156.0 807 68.5
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1147.9 758 72.6
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1147.9 807 69.5
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1147.5 807 68.0
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1147.1 805 67.0
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1147.1 807 68.0
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1144.8 817 67.7
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1144.8 808 69.1
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1142.1 842 66.4
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1133.6 806 66.7
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1132.5 818 66.5
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1130.2 807 67.8
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1127.1 806 68.1
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1123.2 774 69.0
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1122.1 804 66.3
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1121.3 815 65.8
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1118.6 804 65.3
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1115.1 888 62.8
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1110.1 804 65.5
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1098.6 837 64.8
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1098.6 850 62.0
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1087.4 805 66.8
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1085.9 803 65.1
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1078.2 804 64.3
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 2.7e-311 1071.6 805 63.5
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 2.7e-311 1071.6 806 63.9
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 5.4e-310 1067.4 802 63.5
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 9.2e-310 1066.6 806 63.6
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 6.0e-309 1063.9 805 63.5
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 2.3e-308 1062.0 805 63.7
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 6.6e-308 1060.4 808 64.0
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 8.7e-308 1060.1 813 63.3
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 8.7e-308 1060.1 813 63.3
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 2.8e-306 1055.0 806 62.7
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 6.2e-306 1053.9 806 62.7
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 3.4e-304 1048.1 800 61.9
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 1.9e-302 1042.3 803 62.5
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 2.4e-302 1042.0 801 61.8
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 4.2e-302 1041.2 848 60.5
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 4.2e-302 1041.2 805 62.7
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 1.0e-300 1036.6 859 60.2
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 2.5e-299 1031.9 806 61.0
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 4.0e-297 1024.6 808 60.5
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 9.0e-297 1023.5 808 61.3
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 2.6e-296 1021.9 792 62.9
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.6e-296 1021.9 806 59.3
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 4.9e-295 1017.7 801 60.7
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 3.2e-294 1015.0 810 59.9
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 3.0e-292 1008.4 805 61.4
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 3.4e-280 968.4 720 66.0
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 2.5e-275 952.2 713 65.8
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 3.2e-270 935.3 459 98.3
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 1.4e-260 903.3 730 59.9
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.5e-251 873.2 598 70.2
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 5.7e-251 871.3 804 54.1
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 8.3e-242 840.9 604 68.4
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 4.7e-237 825.1 616 65.4
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 1.5e-230 803.5 614 61.7
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 7.5e-211 738.0 826 46.9
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 9.2e-209 731.1 602 59.6
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 4.9e-202 708.8 832 45.0
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 4.0e-196 689.1 830 44.7
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 2.6e-171 606.7 531 57.8
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 9.7e-158 561.6 458 60.5
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 4.2e-153 546.2 595 47.6
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.1e-144 517.3 461 55.3
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.7e-144 516.9 399 66.4
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.1e-129 468.4 464 50.9
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 2.3e-127 460.7 314 69.7
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 6.8e-127 459.1 374 60.7
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 4.4e-126 456.4 447 52.1
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 2.8e-104 384.0 346 59.8
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 8.4e-93 345.9 306 61.8
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 1.0e-90 339.0 193 76.2
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 6.6e-82 309.7 280 53.6
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 3.6e-80 303.9 228 66.2
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 2.7e-75 287.7 508 35.8
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 6.4e-69 266.5 146 79.5
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 1.3e-64 252.3 149 76.5
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.4e-55 222.2 123 73.2
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 3.2e-52 211.1 193 50.8
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 8.2e-48 196.4 147 56.5
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 3.2e-44 184.5 853 25.2
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.5e-41 174.9 95 75.8
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.2e-38 166.0 189 46.0
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 4.8e-32 144.1 92 69.6
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 7.0e-23 113.6 54 85.2
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.5e-22 111.3 198 34.8
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 9.5e-12 76.6 111 34.2
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 6.1e-11 73.9 187 31.0
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 2.6e-09 68.6 246 27.6
Solyc12g056130.2 Solanum lycopersicum HOM05D001597 ORTHO05D001512 3.7e-08 64.7 231 28.1
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 4.9e-08 64.3 156 30.8
CDE10G1194 Ceratophyllum demersum HOM05D002322 ORTHO05D002536 1.4e-07 62.8 142 30.3
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 1.8e-07 62.4 167 30.5
Eucgr.F04351 Eucalyptus grandis HOM05D002322 ORTHO05D002536 2.4e-07 62.0 187 29.9
HanXRQChr16g0527191 Helianthus annuus HOM05D001597 ORTHO05D001512 5.4e-07 60.8 220 25.5
Pp3c7_8560 Physcomitrium patens HOM05D001597 ORTHO05D001512 5.4e-07 60.8 260 26.5
SGA_v2.0_scaffold42G15940 Striga asiatica HOM05D002322 ORTHO05D002536 1.6e-06 59.3 188 30.3
Haze_15604 Corylus avellana HOM05D001597 ORTHO05D001512 2.0e-06 58.9 248 29.4
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 2.7e-06 58.5 52 50.0
Ca_23559_v3 Cicer arietinum L. HOM05D001597 ORTHO05D001512 2.7e-06 58.5 272 28.3
HanXRQChr16g0523421 Helianthus annuus HOM05D001597 ORTHO05D001512 2.7e-06 58.5 184 27.2
PGSC0003DMG400004985 Solanum tuberosum HOM05D001597 ORTHO05D001512 2.7e-06 58.5 167 29.3
MBI16_g07660_MAGBIO Magnolia biondii HOM05D002322 ORTHO05D002536 4.5e-06 57.8 125 30.4
Nitab4.5_0000200g0020 Nicotiana tabacum HOM05D001597 ORTHO05D001512 5.9e-06 57.4 273 27.1
PSO135G0595 Papaver somniferum HOM05D001597 ORTHO05D001512 5.9e-06 57.4 167 29.3
PSO384G0773 Papaver somniferum HOM05D001597 ORTHO05D001512 5.9e-06 57.4 167 29.3
SMO116G0461 Selaginella moellendorffii HOM05D000563 ORTHO05D000536 7.7e-06 57.0 168 29.2


User provided reference genes

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