Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.6e-83 312.0 158 100.0
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.2e-80 303.1 158 97.5
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 4.6e-80 301.2 158 96.8
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 3.1e-76 288.5 158 93.7
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.2e-74 282.3 158 92.4
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 4.2e-73 278.1 158 90.5
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 2.4e-68 262.3 158 83.5
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 2.5e-65 252.3 154 81.2
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.3e-63 245.7 135 93.3
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 1.0e-55 220.3 149 74.5
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 3.0e-55 218.8 153 71.2
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 9.7e-54 213.8 155 67.7
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 5.3e-52 208.0 157 66.2
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 9.1e-52 207.2 147 69.4
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 1.2e-51 206.8 155 66.5
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 1.6e-51 206.5 156 66.7
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 2.0e-51 206.1 151 69.5
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.7e-50 203.0 127 77.2
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 2.2e-50 202.6 125 76.8
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 2.2e-50 202.6 154 65.6
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 2.9e-50 202.2 146 65.1
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 3.8e-50 201.8 151 62.9
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 6.5e-50 201.1 158 67.7
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 8.5e-50 200.7 155 65.8
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 2.5e-49 199.1 147 66.7
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.2e-49 198.7 125 79.2
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 3.2e-49 198.7 153 67.3
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.2e-49 198.4 152 69.1
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 5.5e-49 198.0 145 67.6
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 7.2e-49 197.6 156 67.3
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 7.2e-49 197.6 153 65.4
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 7.2e-49 197.6 132 75.0
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 9.4e-49 197.2 159 62.9
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 2.1e-48 196.1 152 67.1
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 2.1e-48 196.1 127 76.4
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 2.1e-48 196.1 157 66.9
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 2.7e-48 195.7 152 65.1
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 2.7e-48 195.7 161 64.0
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 2.7e-48 195.7 151 62.3
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 2.7e-48 195.7 152 67.1
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 4.7e-48 194.9 154 63.6
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 4.7e-48 194.9 154 65.6
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 6.1e-48 194.5 125 74.4
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 6.1e-48 194.5 125 77.6
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 6.1e-48 194.5 129 76.0
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 8.0e-48 194.1 152 67.1
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 8.0e-48 194.1 154 68.2
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 8.0e-48 194.1 159 61.6
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 1.0e-47 193.7 152 67.8
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.0e-47 193.7 153 66.7
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.4e-47 193.4 123 77.2
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.4e-47 193.4 160 63.1
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.4e-47 193.4 125 75.2
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 1.8e-47 193.0 127 73.2
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 2.3e-47 192.6 152 66.4
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 2.3e-47 192.6 149 64.4
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 3.0e-47 192.2 151 66.9
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 3.0e-47 192.2 152 65.8
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 3.0e-47 192.2 152 65.8
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 8.8e-47 190.7 148 63.5
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 1.2e-46 190.3 154 62.3
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 1.2e-46 190.3 155 63.2
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.5e-46 189.9 152 65.1
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 2.0e-46 189.5 124 74.2
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 2.6e-46 189.1 151 64.2
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 2.6e-46 189.1 154 65.6
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 5.7e-46 188.0 152 64.5
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.3e-45 186.8 155 60.6
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.7e-45 186.4 156 62.8
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 2.2e-45 186.0 150 64.0
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 2.2e-45 186.0 128 71.9
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 2.2e-45 186.0 124 75.8
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.1e-44 183.7 130 71.5
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 1.1e-44 183.7 129 71.3
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 2.4e-44 182.6 155 64.5
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 3.5e-43 178.7 147 68.0
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 3.5e-43 178.7 152 61.8
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.7e-42 176.4 153 62.7
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 1.7e-42 176.4 127 66.1
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 2.2e-42 176.0 153 62.7
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 8.5e-42 174.1 126 68.3
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.1e-41 173.7 152 62.5
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 2.5e-41 172.6 155 61.3
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 4.2e-41 171.8 148 60.1
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 9.5e-41 170.6 129 65.1
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 8.0e-40 167.5 152 58.6
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 8.0e-40 167.5 157 55.4
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.0e-39 167.2 124 66.1
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 4.0e-39 165.2 156 55.8
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 6.8e-39 164.5 127 63.8
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 2.0e-38 162.9 154 59.1
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 4.4e-38 161.8 117 67.5
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 4.4e-38 161.8 130 60.0
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 9.8e-38 160.6 125 64.8
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.3e-37 160.2 126 67.5
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 1.7e-37 159.8 136 58.1
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 1.4e-36 156.8 117 65.0
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.8e-36 156.4 126 65.9
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 2.4e-36 156.0 152 53.9
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 4.1e-36 155.2 129 60.5
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 2.7e-35 152.5 131 58.8
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.3e-34 150.2 150 56.7
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 1.9e-33 146.4 130 59.2
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 2.5e-33 146.0 135 57.8
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 7.3e-33 144.4 123 59.3
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 2.9e-29 132.5 129 51.2
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.4e-28 130.2 150 50.7
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 1.8e-28 129.8 150 50.7
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 3.2e-28 129.0 120 51.7
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 5.9e-27 124.8 104 63.5
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 5.6e-25 118.2 114 54.4
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 9.5e-25 117.5 83 68.7
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 1.2e-22 110.5 90 58.9
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 5.8e-22 108.2 116 50.0
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 3.7e-21 105.5 131 45.0
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 2.4e-20 102.8 135 45.9
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 6.6e-18 94.7 81 55.6
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 8.6e-18 94.4 91 56.0
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 1.5e-17 93.6 155 39.4
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.1e-15 87.4 110 39.1
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.8e-15 86.7 99 46.5
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 1.7e-13 80.1 114 43.9
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 2.7e-11 72.8 85 49.4
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.1e-09 67.4 49 75.5
SEGI_35230 Sequoiadendron giganteum HOM05D006402 ORTHO05D387249 1.5e-06 57.0 50 48.0
BcaC08g47102 Brassica carinata HOM05D006402 ORTHO05D008099 2.0e-06 56.6 63 52.4


User provided reference genes

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