Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 8.8e-125 450.3 225 100.0
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 1.9e-119 432.6 225 95.6
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 9.8e-116 420.2 225 93.8
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 1.0e-88 330.5 223 76.7
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 3.1e-85 318.9 184 85.3
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.4e-82 310.1 227 68.3
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 1.9e-82 309.7 189 74.6
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 4.1e-82 308.5 227 67.8
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 5.4e-82 308.1 231 67.5
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 7.1e-82 307.8 177 80.8
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 2.7e-81 305.8 228 66.7
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 3.5e-81 305.4 223 66.8
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 3.9e-80 302.0 189 73.0
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 3.9e-80 302.0 213 69.5
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 3.3e-79 298.9 219 69.9
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 4.3e-79 298.5 192 72.4
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 4.3e-79 298.5 179 74.9
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 7.3e-79 297.7 179 76.5
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 7.3e-79 297.7 223 64.1
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 9.5e-79 297.4 189 72.0
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 1.2e-78 297.0 191 71.7
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 2.1e-78 296.2 215 67.4
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 2.8e-78 295.8 179 76.0
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 8.1e-78 294.3 178 75.8
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.1e-77 293.9 179 73.7
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.1e-77 293.9 220 65.0
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 1.4e-77 293.5 215 66.0
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 1.8e-77 293.1 222 64.4
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 3.1e-77 292.4 179 73.2
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 6.8e-77 291.2 193 69.9
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 8.9e-77 290.8 220 64.1
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 8.9e-77 290.8 176 74.4
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.2e-76 290.4 220 64.5
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 1.2e-76 290.4 213 66.2
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 1.5e-76 290.0 191 71.7
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.5e-76 290.0 181 75.7
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 2.0e-76 289.7 174 76.4
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 3.4e-76 288.9 218 64.2
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 5.8e-76 288.1 175 74.9
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 1.3e-75 287.0 218 64.2
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 1.3e-75 287.0 176 75.0
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 2.2e-75 286.2 204 66.7
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 2.2e-75 286.2 246 59.3
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 2.9e-75 285.8 190 70.5
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 3.7e-75 285.4 189 70.4
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 4.9e-75 285.0 176 73.9
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 1.4e-74 283.5 190 73.2
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.4e-74 283.5 222 67.1
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 2.4e-74 282.7 174 73.6
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 4.1e-74 282.0 194 70.1
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 4.1e-74 282.0 194 70.1
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 7.1e-74 281.2 205 64.9
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 9.2e-74 280.8 244 60.2
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 3.5e-73 278.9 176 74.4
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 6.0e-73 278.1 172 73.8
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 1.0e-72 277.3 175 72.6
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 2.3e-72 276.2 177 73.4
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 5.1e-72 275.0 189 68.3
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 6.6e-72 274.6 201 66.7
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 6.6e-72 274.6 201 66.7
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 8.6e-72 274.2 176 75.0
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 8.6e-72 274.2 189 69.8
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 8.6e-72 274.2 189 69.8
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 1.1e-71 273.9 177 72.9
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 1.5e-71 273.5 201 66.2
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 2.5e-71 272.7 181 69.6
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 2.5e-71 272.7 194 68.0
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 3.3e-71 272.3 177 71.8
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 5.6e-71 271.6 176 72.2
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 5.6e-71 271.6 222 60.8
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 7.3e-71 271.2 176 73.9
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 9.6e-71 270.8 175 71.4
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 9.6e-71 270.8 182 70.3
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 1.6e-70 270.0 201 66.2
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 4.7e-70 268.5 175 71.4
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 6.2e-70 268.1 176 71.0
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 1.4e-69 266.9 181 70.2
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 1.4e-69 266.9 204 66.7
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 2.4e-69 266.2 176 69.9
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 7.6e-68 261.2 179 69.3
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 9.9e-68 260.8 201 65.2
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 3.5e-65 252.3 174 64.4
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 6.0e-65 251.5 180 69.4
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 1.7e-64 250.0 216 61.6
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 1.7e-64 250.0 196 64.3
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 3.9e-64 248.8 180 68.9
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 8.7e-64 247.7 159 71.1
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 1.1e-63 247.3 169 68.6
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 2.1e-62 243.0 148 73.6
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 3.4e-60 235.7 180 64.4
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 2.2e-59 233.0 147 74.8
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 3.8e-59 232.3 133 80.5
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 6.4e-59 231.5 188 61.7
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 1.1e-55 220.7 137 70.8
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 2.5e-55 219.5 182 63.2
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 9.3e-50 201.1 188 54.8
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 2.7e-49 199.5 167 58.1
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 6.0e-49 198.4 152 67.1
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 8.7e-48 194.5 190 51.6
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 3.3e-47 192.6 160 60.6
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 5.6e-47 191.8 124 71.0
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 4.8e-46 188.7 165 53.3
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 8.1e-46 188.0 167 55.1
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 6.5e-43 178.3 179 48.6
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 8.4e-43 177.9 139 62.6
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 8.4e-43 177.9 181 47.0
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 2.1e-41 173.3 179 50.3
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 2.3e-40 169.9 127 63.8
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 4.8e-38 162.2 123 64.2
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 1.0e-35 154.5 107 69.2
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 5.5e-34 148.7 150 56.0
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 4.6e-33 145.6 85 77.6
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 3.3e-31 139.4 104 60.6
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 2.8e-30 136.3 149 51.0
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 6.9e-29 131.7 84 71.4
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 9.4e-26 121.3 132 50.8
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 3.3e-23 112.8 71 81.7
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 3.3e-23 112.8 85 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 9.7e-23 111.3 126 46.8
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 2.2e-22 110.2 63 74.6
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 2.8e-22 109.8 122 50.0
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 3.8e-19 99.4 99 57.6
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 5.1e-16 89.0 54 77.8
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 8.8e-16 88.2 71 69.0
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 1.4e-13 80.9 71 64.8
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 7.7e-12 75.1 109 34.9
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 2.7e-09 66.6 48 68.8
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 1.0e-08 64.7 39 76.9
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 6.7e-08 62.0 43 55.8


User provided reference genes

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