Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 2.8e-123 445.3 225 100.0
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 1.0e-112 410.2 216 95.4
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 1.2e-110 403.3 216 95.4
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 5.6e-87 324.7 193 87.6
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 1.7e-83 313.2 190 83.7
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 2.8e-70 269.2 209 65.6
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 2.9e-67 259.2 186 73.7
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 3.8e-67 258.8 173 74.0
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 3.2e-66 255.8 188 72.3
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 5.4e-66 255.0 179 69.8
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 2.1e-65 253.1 190 70.5
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 8.7e-64 247.7 181 66.9
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 1.9e-63 246.5 184 66.3
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 4.3e-63 245.4 183 67.8
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 9.6e-63 244.2 176 67.6
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 2.1e-62 243.0 186 68.8
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 2.1e-62 243.0 183 67.2
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 3.6e-62 242.3 180 67.2
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 4.8e-62 241.9 180 68.3
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 1.1e-61 240.7 177 67.2
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 4.0e-61 238.8 185 67.6
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 5.3e-61 238.4 178 67.4
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 6.9e-61 238.0 172 68.0
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 1.2e-60 237.3 178 67.4
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 1.2e-60 237.3 182 67.0
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 2.6e-60 236.1 183 66.1
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 2.6e-60 236.1 169 68.6
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 3.4e-60 235.7 182 65.9
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 3.4e-60 235.7 163 72.4
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 3.4e-60 235.7 189 63.5
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 4.4e-60 235.3 183 66.1
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 4.4e-60 235.3 187 64.2
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 5.8e-60 235.0 179 67.0
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 7.6e-60 234.6 183 65.6
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 9.9e-60 234.2 167 70.1
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 9.9e-60 234.2 178 64.0
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 1.7e-59 233.4 170 69.4
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 2.2e-59 233.0 175 68.6
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 2.9e-59 232.6 184 68.5
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 3.8e-59 232.3 195 63.6
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 4.9e-59 231.9 183 65.6
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 4.9e-59 231.9 182 64.8
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 6.4e-59 231.5 184 63.6
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 2.4e-58 229.6 187 61.5
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 2.4e-58 229.6 183 64.5
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 2.4e-58 229.6 181 65.2
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 2.4e-58 229.6 181 68.0
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 3.2e-58 229.2 183 67.2
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 3.2e-58 229.2 183 65.0
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 4.2e-58 228.8 166 74.1
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 5.4e-58 228.4 161 67.7
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.2e-57 227.3 171 65.5
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.6e-57 226.9 171 67.3
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 1.6e-57 226.9 207 62.8
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 2.1e-57 226.5 171 65.5
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 2.1e-57 226.5 168 66.1
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.1e-57 226.5 171 64.9
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 2.7e-57 226.1 176 62.5
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 1.7e-56 223.4 185 62.7
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 8.7e-56 221.1 180 63.9
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 1.9e-55 219.9 180 63.3
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 2.5e-55 219.5 173 63.6
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 3.3e-55 219.2 171 66.1
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 3.3e-55 219.2 183 63.9
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 4.3e-55 218.8 178 62.9
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 7.4e-55 218.0 173 66.5
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 2.1e-54 216.5 164 65.2
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 1.1e-53 214.2 177 59.3
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 1.4e-53 213.8 168 60.7
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 1.4e-53 213.8 148 70.3
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 1.8e-53 213.4 164 64.0
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 3.1e-53 212.6 168 60.7
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 3.1e-53 212.6 168 60.7
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 3.1e-53 212.6 177 59.3
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 3.1e-53 212.6 171 62.6
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 6.9e-53 211.5 168 60.1
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 6.9e-53 211.5 168 60.1
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 9.0e-53 211.1 168 60.1
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 1.2e-52 210.7 179 58.7
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 1.2e-52 210.7 167 60.5
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 1.5e-52 210.3 168 59.5
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 2.0e-52 209.9 183 60.7
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 3.4e-52 209.1 141 73.8
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 4.5e-52 208.8 168 59.5
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 7.6e-52 208.0 179 58.1
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 2.2e-51 206.5 178 59.6
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 1.9e-50 203.4 152 68.4
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 3.5e-49 199.1 181 56.9
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 1.9e-47 193.4 134 70.9
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 1.9e-47 193.4 236 45.8
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 2.1e-46 189.9 131 70.2
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 6.2e-46 188.3 134 67.2
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 3.1e-45 186.0 137 68.6
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 3.9e-40 169.1 188 53.7
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 6.7e-40 168.3 186 48.4
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 3.4e-36 156.0 160 56.9
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 4.5e-36 155.6 108 71.3
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.4e-34 150.6 147 51.7
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 4.2e-34 149.1 168 53.0
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 2.9e-27 126.3 94 69.1
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 3.2e-26 122.9 172 42.4
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 4.6e-25 119.0 83 65.1
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 3.3e-23 112.8 87 63.2
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 9.1e-21 104.8 111 49.5
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.0e-19 101.3 168 42.3
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 2.2e-19 100.1 185 34.6
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 1.9e-18 97.1 112 47.3
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 4.2e-18 95.9 75 65.3
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 1.6e-17 94.0 138 38.4
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 4.8e-14 82.4 65 63.1
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 2.6e-07 60.1 40 72.5
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.6e-07 60.1 89 39.3


User provided reference genes

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