Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009911 Solanum tuberosum HOM05D001842 ORTHO05D001849 4.8e-64 248.1 163 100.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 8.0e-51 204.1 143 73.4
CAN.G311.131 Capsicum annuum HOM05D001842 ORTHO05D001849 3.1e-47 192.2 146 71.2
Sopen04g036180 Solanum pennellii HOM05D001842 ORTHO05D001849 1.2e-41 173.7 145 89.0
Peaxi162Scf00680g00017 Petunia axillaris HOM05D001842 ORTHO05D001849 8.3e-40 167.5 145 86.9
Nitab4.5_0010095g0010 Nicotiana tabacum HOM05D001842 ORTHO05D001849 5.3e-39 164.9 145 86.2
Dinv31963 Davidia involucrata HOM05D001842 ORTHO05D001849 4.4e-33 145.2 147 54.4
Hma1.2p1_0612F.1_g188880 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 3.1e-31 139.0 144 53.5
Cc10_g00500 Coffea canephora HOM05D001842 ORTHO05D001849 9.1e-31 137.5 146 52.7
Oeu026108.1 Olea europaea HOM05D001842 ORTHO05D001849 1.9e-28 129.8 139 52.5
Hma1.2p1_0699F.1_g205520 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 9.5e-28 127.5 147 49.7
SGA_v2.0_scaffold319G48553 Striga asiatica HOM05D001842 ORTHO05D001849 1.8e-26 123.2 130 64.6
MSTRG.988 Avicennia marina HOM05D001842 ORTHO05D001849 3.0e-26 122.5 146 48.6
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 1.5e-25 120.2 151 45.7
Actinidia37913 Actinidia chinensis HOM05D001842 ORTHO05D001849 1.7e-24 116.7 165 49.7
Lsat_1_v5_gn_2_1961 Lactuca sativa HOM05D001842 ORTHO05D001849 2.8e-24 115.9 173 50.9
Actinidia28609 Actinidia chinensis HOM05D001842 ORTHO05D001849 6.3e-24 114.8 165 52.1
ECA238G0776 Erigeron canadensis HOM05D001842 ORTHO05D001849 6.3e-24 114.8 171 55.0
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 8.3e-24 114.4 147 45.6
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 3.2e-23 112.5 145 43.4
unitig_22.g5814 Utricularia gibba HOM05D001842 ORTHO05D001849 9.2e-23 110.9 149 48.3
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 1.2e-22 110.5 149 44.3
Nn6g31683 Nelumbo nucifera HOM05D001842 ORTHO05D001849 1.2e-22 110.5 150 44.7
Duzib093G1115 Durio zibethinus HOM05D001842 ORTHO05D001849 1.6e-22 110.2 166 62.7
COL.COLO4_07214 Corchorus olitorius HOM05D001842 ORTHO05D001849 2.0e-22 109.8 157 59.9
Lj4C8G7 Lonicera japonica HOM05D001842 ORTHO05D001849 2.7e-22 109.4 148 47.3
Manes.18G003700 Manihot esculenta HOM05D001842 ORTHO05D001849 4.5e-22 108.6 145 45.5
Thecc.08G062300 Theobroma cacao HOM05D001842 ORTHO05D001849 1.9e-20 103.2 166 61.4
HanXRQChr14g0427401 Helianthus annuus HOM05D001842 ORTHO05D001849 5.6e-20 101.7 192 46.9
Eucgr.F01786 Eucalyptus grandis HOM05D001842 ORTHO05D001849 1.6e-19 100.1 142 44.4
EL10Ac1g01913 Beta vulgaris HOM05D001842 ORTHO05D001849 2.1e-19 99.8 144 45.8
AUR62042905 Chenopodium quinoa HOM05D001842 ORTHO05D001849 2.8e-19 99.4 144 45.1
DCAR_013929 Daucus carota HOM05D001842 ORTHO05D001849 2.8e-19 99.4 146 43.8
TWI56G1388 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 3.6e-19 99.0 152 44.1
Sabra02G0006400 Salix brachista HOM05D001842 ORTHO05D001849 1.0e-18 97.4 136 44.1
Potri.002G008600 Populus trichocarpa HOM05D001842 ORTHO05D001849 2.3e-18 96.3 136 44.1
Lj4A809G47 Lonicera japonica HOM05D001842 ORTHO05D001849 3.1e-18 95.9 153 43.1
Manes.05G124400 Manihot esculenta HOM05D001842 ORTHO05D001849 4.0e-18 95.5 149 42.3
Ah.00g001000 Amaranthus hybridus HOM05D001842 ORTHO05D001849 5.2e-18 95.1 144 44.4
AUR62035136 Chenopodium quinoa HOM05D001842 ORTHO05D001849 1.2e-17 94.0 139 44.6
Gorai.002G114800 Gossypium raimondii HOM05D001842 ORTHO05D001849 1.2e-17 94.0 185 55.1
Sc02g0009180 Simmondsia chinensis HOM05D001842 ORTHO05D001849 1.2e-17 94.0 136 43.4
RcHm_v2.0_Chr7g0215891 Rosa chinensis HOM05D001842 ORTHO05D001849 4.4e-17 92.0 175 52.0
Cfa014111 Carpinus fangiana HOM05D001842 ORTHO05D001849 7.5e-17 91.3 142 52.1
Gohir.A01G103800 Gossypium hirsutum HOM05D001842 ORTHO05D001849 7.5e-17 91.3 172 56.4
Gohir.D01G089100 Gossypium hirsutum HOM05D001842 ORTHO05D001849 7.5e-17 91.3 172 55.2
CiPaw.07G136200 Carya illinoinensis HOM05D001842 ORTHO05D001849 9.8e-17 90.9 163 58.3
CiPaw.05G092800 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.3e-16 90.5 145 40.7
MBI08_g37961_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 1.3e-16 90.5 146 41.1
Cpa.g.sc26.167 Carica papaya HOM05D001842 ORTHO05D001849 1.7e-16 90.1 195 48.7
FvH4_5g25580 Fragaria vesca HOM05D001842 ORTHO05D001849 1.7e-16 90.1 177 50.8
CiPaw.06G115800 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.9e-15 86.7 144 38.9
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 5.4e-15 85.1 177 33.3
Lalb_Chr04g0246921 Lupinus albus HOM05D001842 ORTHO05D001849 5.4e-15 85.1 151 35.8
MBI05_g33293_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 5.4e-15 85.1 149 38.9
FAN04G2289 Fragaria x ananassa HOM05D001842 ORTHO05D001849 7.0e-15 84.7 177 50.3
vmacro21789 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 9.2e-15 84.3 157 45.9
Rhsim06G0005300 Rhododendron simsii HOM05D001842 ORTHO05D001849 1.2e-14 84.0 165 44.2
Hund05092 Selenicereus undatus HOM05D001842 ORTHO05D001849 1.2e-14 84.0 142 39.4
Haze_22829 Corylus avellana HOM05D001842 ORTHO05D001849 1.6e-14 83.6 155 47.7
Phvul.008G292100 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 1.6e-14 83.6 150 36.0
CiPaw.08G075300 Carya illinoinensis HOM05D001842 ORTHO05D001849 2.7e-14 82.8 159 56.6
SGA_v2.0_scaffold235G43677 Striga asiatica HOM05D001842 ORTHO05D001849 3.5e-14 82.4 131 48.1
FAN08G1553 Fragaria x ananassa HOM05D001842 ORTHO05D001849 4.6e-14 82.0 177 49.2
MD06G1007400 Malus domestica HOM05D001842 ORTHO05D001849 4.6e-14 82.0 191 46.6
Medtr5g099170 Medicago truncatula HOM05D001842 ORTHO05D001849 1.3e-13 80.5 138 37.7
LjContig00081g0008818 Lotus japonicus HOM05D001842 ORTHO05D001849 1.7e-13 80.1 146 34.9
ClCG11G018830 Citrullus lanatus HOM05D001842 ORTHO05D001849 2.3e-13 79.7 203 51.2
GSVIVG01023872001 Vitis vinifera HOM05D001842 ORTHO05D001849 2.3e-13 79.7 148 38.5
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 3.9e-13 79.0 148 33.8
ATR0807G019 Amborella trichopoda HOM05D001842 ORTHO05D001849 5.0e-13 78.6 133 38.3
Cfa005365 Carpinus fangiana HOM05D001842 ORTHO05D001849 5.0e-13 78.6 159 33.3
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 1.5e-12 77.0 161 32.9
BcaB07g32071 Brassica carinata HOM05D001842 ORTHO05D001849 1.9e-12 76.6 175 50.9
Glyma.02G311333 Glycine max HOM05D001842 ORTHO05D001849 3.3e-12 75.9 146 33.6
Glyma.14G001200 Glycine max HOM05D001842 ORTHO05D001849 3.3e-12 75.9 146 34.2
BcaB03g14302 Brassica carinata HOM05D001842 ORTHO05D001849 4.3e-12 75.5 175 50.9
BcaC05g25980 Brassica carinata HOM05D001842 ORTHO05D001849 4.3e-12 75.5 170 50.0
A06p16700 Brassica napus HOM05D001842 ORTHO05D001849 4.3e-12 75.5 170 50.0
C05p19300 Brassica napus HOM05D001842 ORTHO05D001849 4.3e-12 75.5 170 50.0
BolC5t30637H Brassica oleracea HOM05D001842 ORTHO05D001849 4.3e-12 75.5 170 50.0
Ciclev10000095m.g Citrus clementina HOM05D001842 ORTHO05D001849 4.3e-12 75.5 67 59.7
TPR.G18637 Trifolium pratense HOM05D001842 ORTHO05D001849 5.6e-12 75.1 151 35.8
BraA06t24785Z Brassica rapa HOM05D001842 ORTHO05D001849 7.3e-12 74.7 170 50.0
VMungo1309G2204 Vigna mungo HOM05D001842 ORTHO05D001849 7.3e-12 74.7 152 33.6
CANSAT11G0401 Cannabis sativa HOM05D001842 ORTHO05D001849 9.5e-12 74.3 183 49.7
Ca_06502_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 9.5e-12 74.3 159 40.3
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 9.5e-12 74.3 137 38.7
Migut.O00314 Erythranthe guttata HOM05D001842 ORTHO05D001849 1.2e-11 73.9 106 45.3
QL02p015109 Quercus lobata HOM05D001842 ORTHO05D001849 1.6e-11 73.6 80 53.8
Lalb_Chr11g0061511 Lupinus albus HOM05D001842 ORTHO05D001849 2.1e-11 73.2 200 35.0
VMungo0647G1618 Vigna mungo HOM05D001842 ORTHO05D001849 2.1e-11 73.2 146 34.2
arahy.Tifrunner.gnm1.ann1.649J27 Arachis hypogaea HOM05D001842 ORTHO05D001849 4.7e-11 72.0 146 32.9
BolC7t42821H Brassica oleracea HOM05D001842 ORTHO05D001849 4.7e-11 72.0 141 45.4
Ca_15404_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 8.0e-11 71.2 136 35.3
Ca_29885_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 8.0e-11 71.2 136 35.3
MELO3C017039.2 Cucumis melo HOM05D001842 ORTHO05D001849 8.0e-11 71.2 220 46.4
Lalb_Chr23g0265681 Lupinus albus HOM05D001842 ORTHO05D001849 1.4e-10 70.5 205 40.0
Sp1g18460 Schrenkiella parvula HOM05D001842 ORTHO05D001849 1.4e-10 70.5 191 47.1
PGR083G1188 Punica granatum HOM05D001842 ORTHO05D001849 1.8e-10 70.1 167 43.7
arahy.Tifrunner.gnm1.ann1.1FV09I Arachis hypogaea HOM05D001842 ORTHO05D001849 2.3e-10 69.7 146 32.2
CDE02G2542 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 3.1e-10 69.3 188 41.5
GSVIVG01013392001 Vitis vinifera HOM05D001842 ORTHO05D001849 4.0e-10 68.9 76 47.4
Oeu012542.1 Olea europaea HOM05D001842 ORTHO05D001849 5.2e-10 68.6 151 43.7
Os03g0130500 Oryza sativa ssp. japonica HOM05D001842 ORTHO05D001849 6.8e-10 68.2 154 34.4
Psat5g009840 Pisum sativum HOM05D001842 ORTHO05D001849 6.8e-10 68.2 224 37.5
Atru.chr13.111 Acer truncatum HOM05D001842 ORTHO05D001849 1.2e-09 67.4 77 55.8
RcHm_v2.0_Chr6g0280871 Rosa chinensis HOM05D001842 ORTHO05D001849 1.2e-09 67.4 140 31.4
CARHR021200 Cardamine hirsuta HOM05D001842 ORTHO05D001849 1.5e-09 67.0 190 45.8
VMungo1309G2588 Vigna mungo HOM05D001842 ORTHO05D001849 1.5e-09 67.0 138 34.1
A07p15500 Brassica napus HOM05D001842 ORTHO05D001849 2.0e-09 66.6 158 51.3
FvH4_2g16750 Fragaria vesca HOM05D001842 ORTHO05D001849 2.0e-09 66.6 140 35.7
FAN24G0597 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.0e-09 66.6 140 35.7
FAN27G0714 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.0e-09 66.6 140 30.7
TPR.G38237 Trifolium pratense HOM05D001842 ORTHO05D001849 2.0e-09 66.6 72 50.0
CsaV3_4G037410 Cucumis sativus L. HOM05D001842 ORTHO05D001849 2.6e-09 66.2 221 43.0
Aa31LG7G4920 Aethionema arabicum HOM05D001842 ORTHO05D001849 4.4e-09 65.5 188 48.4
BcaC06g34833 Brassica carinata HOM05D001842 ORTHO05D001849 4.4e-09 65.5 158 50.6
C07p22830 Brassica napus HOM05D001842 ORTHO05D001849 4.4e-09 65.5 158 50.6
Carub.0001s2021 Capsella rubella HOM05D001842 ORTHO05D001849 4.4e-09 65.5 191 46.6
THA.LOC104813747 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 4.4e-09 65.5 181 48.1
AL1G33750 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 5.8e-09 65.1 185 48.1
BraA07t29291Z Brassica rapa HOM05D001842 ORTHO05D001849 5.8e-09 65.1 158 50.6
THA.LOC104809853 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 7.5e-09 64.7 187 46.5
Thhalv10006674m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 1.3e-08 63.9 192 46.4
AT1G20760 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 1.7e-08 63.5 191 47.6
Medtr3g115640 Medicago truncatula HOM05D001842 ORTHO05D001849 2.9e-08 62.8 72 47.2
CDE04G3412 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 3.7e-08 62.4 188 39.9
CDE07G1300 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 4.9e-08 62.0 144 32.6
VMungo1309G0061 Vigna mungo HOM05D001842 ORTHO05D001849 4.9e-08 62.0 59 54.2
Oeu039712.1 Olea europaea HOM05D001842 ORTHO05D001849 8.3e-08 61.2 125 32.8
Potri.002G008300 Populus trichocarpa HOM05D001842 ORTHO05D001849 8.3e-08 61.2 94 40.4
SHI07965 Sapria himalayana HOM05D001842 ORTHO05D001849 8.3e-08 61.2 145 35.9
arahy.Tifrunner.gnm1.ann1.3BY6RX Arachis hypogaea HOM05D001842 ORTHO05D001849 1.4e-07 60.5 55 52.7
Prupe.8G179600 Prunus persica HOM05D001842 ORTHO05D001849 1.4e-07 60.5 143 39.9
Lj1g0018894 Lotus japonicus HOM05D001842 ORTHO05D001849 1.9e-07 60.1 197 41.1
MD05G1135500 Malus domestica HOM05D001842 ORTHO05D001849 1.9e-07 60.1 143 39.2
Hma1.2p1_0085F.1_g044600 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 2.4e-07 59.7 229 38.9
Sed0009695 Sechium edule HOM05D001842 ORTHO05D001849 3.2e-07 59.3 204 41.2
CDE04G2613 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 4.1e-07 58.9 152 32.2
FAN13G2297 Fragaria x ananassa HOM05D001842 ORTHO05D001849 4.1e-07 58.9 62 51.6
MD10G1140800 Malus domestica HOM05D001842 ORTHO05D001849 4.1e-07 58.9 143 37.8
Psat2g000840 Pisum sativum HOM05D001842 ORTHO05D001849 5.4e-07 58.5 156 45.5
Actinidia17352 Actinidia chinensis HOM05D001842 ORTHO05D001849 9.2e-07 57.8 61 47.5
FAN18G3820 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.2e-06 57.4 62 50.0
MD05G1136400 Malus domestica HOM05D001842 ORTHO05D001849 1.2e-06 57.4 133 33.1
Dinv40195 Davidia involucrata HOM05D001842 ORTHO05D001849 1.6e-06 57.0 54 48.1
arahy.Tifrunner.gnm1.ann1.RT0S28 Arachis hypogaea HOM05D001842 ORTHO05D001849 7.8e-06 54.7 134 30.6
Phvul.009G012300 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 7.8e-06 54.7 59 49.2


User provided reference genes

Program Settings