Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 3.2e-185 651.7 360 100.0
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.3e-170 603.2 360 92.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 6.0e-168 594.3 360 91.4
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.7e-149 533.1 360 83.6
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.3e-117 427.2 354 65.8
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 2.0e-102 376.7 343 63.3
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 3.8e-77 292.7 360 48.3
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 5.3e-71 272.3 257 63.4
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 3.3e-65 253.1 362 43.9
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 5.6e-65 252.3 328 47.0
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 6.2e-64 248.8 365 44.4
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.4e-63 247.7 373 43.2
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 5.3e-63 245.7 358 44.7
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 9.0e-63 245.0 355 44.8
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.5e-62 242.7 371 39.6
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 4.9e-61 239.2 375 42.7
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.4e-61 238.8 373 39.9
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 8.4e-61 238.4 360 44.2
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.1e-60 238.0 373 39.9
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.9e-60 237.3 373 39.7
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.2e-59 234.6 356 43.3
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.0e-58 231.5 388 40.7
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.3e-58 231.1 354 42.1
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.8e-58 230.7 377 39.8
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 3.0e-58 229.9 388 39.7
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 3.0e-58 229.9 362 41.4
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 3.0e-58 229.9 358 43.0
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 3.0e-58 229.9 386 39.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 5.1e-58 229.2 356 42.7
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 6.2e-56 222.2 373 37.5
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 8.1e-56 221.9 321 42.1
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.4e-55 221.1 364 42.6
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.3e-55 219.2 379 39.1
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 9.0e-55 218.4 379 41.2
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.0e-54 217.2 364 42.9
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 4.5e-54 216.1 371 38.3
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.5e-54 216.1 340 40.0
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.3e-53 214.5 376 40.2
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.7e-53 214.2 320 40.6
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.9e-53 213.4 375 38.7
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.9e-53 213.4 351 41.0
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.9e-53 212.6 381 39.1
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 4.9e-53 212.6 359 36.8
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 6.5e-53 212.2 364 39.8
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 2.5e-52 210.3 353 40.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.2e-52 209.9 361 40.7
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 3.2e-52 209.9 374 37.7
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 4.2e-52 209.5 324 42.6
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 9.3e-52 208.4 325 44.6
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 9.3e-52 208.4 359 39.8
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.6e-51 207.6 322 43.2
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.3e-50 203.8 358 37.7
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 3.0e-50 203.4 352 39.5
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 5.1e-50 202.6 370 39.5
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.1e-49 201.4 364 38.2
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.5e-49 201.1 351 41.9
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.3e-49 199.9 366 39.3
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.7e-49 199.1 378 34.9
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.6e-48 197.6 378 34.7
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.8e-48 196.8 380 35.0
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 3.7e-48 196.4 387 41.3
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.8e-48 196.1 363 40.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 6.3e-48 195.7 392 35.5
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 1.1e-47 194.9 393 37.4
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.4e-47 194.5 380 35.3
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.4e-47 193.7 330 40.6
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.6e-46 190.3 356 36.5
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.6e-46 190.3 378 34.4
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 7.6e-46 188.7 351 41.0
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.7e-45 187.6 353 37.7
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 3.8e-45 186.4 350 37.7
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.4e-44 184.5 428 34.6
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 2.5e-44 183.7 385 38.7
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.5e-44 183.7 250 42.0
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 4.2e-44 183.0 354 37.3
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 9.3e-44 181.8 350 36.0
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 2.7e-43 180.3 382 37.2
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.7e-43 180.3 384 37.5
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 6.1e-43 179.1 350 36.9
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 6.1e-43 179.1 388 38.7
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.0e-42 178.3 353 37.7
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.3e-42 177.9 400 35.5
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 6.7e-42 175.6 300 37.0
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 8.7e-42 175.3 363 34.4
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 1.5e-41 174.5 387 38.2
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.9e-41 174.1 373 34.6
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 4.3e-41 172.9 379 35.1
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 5.7e-41 172.6 358 35.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 2.2e-40 170.6 382 36.6
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.7e-40 169.9 348 35.3
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 6.3e-40 169.1 354 35.6
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 4.1e-39 166.4 304 35.2
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 4.1e-39 166.4 354 35.3
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.2e-38 164.9 212 44.8
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.2e-38 164.9 373 34.9
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.2e-38 164.9 377 33.7
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.5e-38 164.5 376 35.6
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.0e-38 164.1 350 35.1
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 3.4e-38 163.3 383 35.2
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 7.7e-38 162.2 288 35.8
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.0e-37 161.8 354 36.2
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.7e-37 161.0 373 34.3
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.7e-37 161.0 355 36.6
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.7e-37 161.0 328 35.1
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.5e-36 157.1 326 34.4
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 5.5e-36 156.0 314 35.7
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.2e-35 154.8 298 37.9
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 6.1e-35 152.5 390 31.8
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 2.0e-33 147.5 357 34.7
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 3.3e-33 146.7 334 32.0
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.3e-33 146.7 248 37.1
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 4.3e-33 146.4 357 35.0
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 5.7e-33 146.0 357 34.7
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.2e-32 144.1 351 35.6
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 2.8e-32 143.7 410 30.2
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.8e-32 142.9 283 36.7
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.4e-31 141.4 364 32.1
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.8e-31 141.0 284 34.2
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 3.1e-31 140.2 359 30.4
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 2.9e-29 133.7 216 36.6
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.4e-28 131.3 371 31.3
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 2.1e-27 127.5 377 36.1
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.3e-24 118.2 363 31.1
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.2e-21 107.5 231 30.7
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.9e-21 107.1 165 40.0
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 5.0e-21 106.3 117 46.2
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 6.5e-21 105.9 357 30.8
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 7.2e-20 102.4 190 38.9
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 6.1e-19 99.4 391 25.8
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 2.0e-17 94.4 237 31.6
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 4.4e-17 93.2 197 32.0
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 4.4e-17 93.2 240 28.8
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 9.1e-15 85.5 253 28.1
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 1.2e-14 85.1 177 38.4
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.9e-12 77.8 216 27.8
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.4e-10 71.6 281 21.0
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 1.8e-10 71.2 104 31.7
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.6e-06 58.2 62 43.5
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 5.9e-06 56.2 233 23.2


User provided reference genes

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