Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 7.3e-153 543.9 281 100.0
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.5e-145 518.8 282 96.8
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 3.6e-144 515.0 282 96.1
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.3e-138 496.5 282 93.6
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.3e-138 495.7 282 93.3
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 5.1e-138 494.6 282 93.3
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 4.5e-134 481.5 282 90.1
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.6e-120 436.4 281 81.9
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.2e-78 297.4 276 61.6
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 4.5e-78 295.4 239 66.9
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 5.9e-78 295.0 254 63.4
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.3e-77 293.9 242 67.8
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 2.7e-75 286.2 284 61.3
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 2.6e-73 279.6 269 61.3
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 7.5e-73 278.1 283 55.5
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 2.2e-72 276.6 268 61.9
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 8.3e-72 274.6 273 60.4
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.4e-71 273.9 265 62.3
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.8e-71 273.5 260 61.9
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.8e-71 273.5 283 59.4
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 2.4e-71 273.1 252 62.3
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 4.1e-71 272.3 273 58.6
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 4.1e-71 272.3 267 59.6
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 5.4e-71 271.9 281 59.1
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 1.2e-70 270.8 196 71.9
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.6e-70 270.4 281 58.7
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 2.7e-70 269.6 261 61.3
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 3.5e-70 269.2 274 58.8
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 3.5e-70 269.2 194 71.1
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 3.5e-70 269.2 265 60.4
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 4.5e-70 268.9 275 58.9
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 4.5e-70 268.9 265 59.6
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 5.9e-70 268.5 256 60.2
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 7.7e-70 268.1 271 59.8
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 7.7e-70 268.1 265 60.4
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 7.7e-70 268.1 281 58.4
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.3e-69 267.3 274 58.4
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.3e-69 267.3 274 58.4
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 1.7e-69 266.9 255 60.8
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 3.8e-69 265.8 240 62.1
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 8.6e-69 264.6 235 60.9
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 1.5e-68 263.8 268 60.4
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.5e-68 263.8 211 67.3
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 3.2e-68 262.7 223 65.0
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 4.2e-68 262.3 273 56.4
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 4.2e-68 262.3 263 59.3
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 9.5e-68 261.2 233 61.8
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 1.2e-67 260.8 198 69.7
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 1.6e-67 260.4 210 67.1
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 2.1e-67 260.0 265 58.1
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 2.1e-67 260.0 279 57.0
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.8e-67 259.6 223 64.6
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 2.8e-67 259.6 206 68.4
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.8e-67 259.6 211 68.2
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 2.8e-67 259.6 206 68.4
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.8e-67 259.6 237 61.2
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 3.6e-67 259.2 274 56.6
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 8.0e-67 258.1 211 67.8
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 8.0e-67 258.1 211 67.8
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 1.0e-66 257.7 198 69.7
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 1.0e-66 257.7 266 58.6
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 1.0e-66 257.7 237 60.8
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 1.0e-66 257.7 280 55.4
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 1.0e-66 257.7 204 66.2
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.4e-66 257.3 201 64.2
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 1.8e-66 256.9 282 55.7
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 2.3e-66 256.5 276 56.9
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 3.0e-66 256.1 269 55.0
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 5.2e-66 255.4 282 55.0
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 1.5e-65 253.8 273 53.8
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 5.7e-65 251.9 270 56.7
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 5.7e-65 251.9 247 58.3
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 5.7e-65 251.9 255 56.9
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 7.5e-65 251.5 207 64.3
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 9.8e-65 251.1 271 55.7
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 1.3e-64 250.8 271 53.9
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.3e-64 250.8 261 54.4
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 3.7e-64 249.2 269 54.6
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 3.7e-64 249.2 259 55.6
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 8.3e-64 248.1 197 66.5
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 8.3e-64 248.1 270 56.3
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.4e-63 247.3 270 55.9
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 3.1e-63 246.1 259 55.6
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 7.0e-63 245.0 184 69.0
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.2e-62 244.2 200 63.5
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 5.9e-62 241.9 186 65.6
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.3e-61 240.7 273 51.6
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 2.9e-61 239.6 179 67.6
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 3.8e-61 239.2 265 54.7
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 5.0e-61 238.8 222 61.3
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 8.6e-61 238.0 267 54.3
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 8.6e-61 238.0 267 54.3
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 1.5e-60 237.3 259 54.8
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 4.3e-60 235.7 257 52.5
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 4.3e-60 235.7 257 52.5
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.1e-59 233.4 252 56.0
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 2.3e-58 229.9 201 61.2
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 8.9e-58 228.0 228 54.4
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 1.2e-57 227.6 249 51.4
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 2.6e-57 226.5 208 57.7
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 9.8e-57 224.6 225 56.9
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 2.9e-56 223.0 166 71.7
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 6.4e-56 221.9 253 49.8
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 7.0e-55 218.4 254 49.6
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 4.6e-54 215.7 266 50.0
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 3.6e-51 206.1 183 56.8
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 8.0e-51 204.9 266 47.0
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 5.2e-50 202.2 144 70.1
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.6e-49 199.9 124 86.3
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 3.4e-49 199.5 183 55.2
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.1e-44 184.5 204 53.4
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.7e-37 160.6 193 51.8
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 6.4e-24 115.5 104 57.7
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 7.1e-23 112.1 84 76.2
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 2.5e-20 103.6 113 53.1
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 1.5e-17 94.4 71 64.8
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 6.4e-16 89.0 100 53.0
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-13 79.0 74 44.6
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 6.7e-13 79.0 71 56.3
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 5.5e-07 59.3 63 50.8
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 5.5e-07 59.3 44 65.9


User provided reference genes

Program Settings