Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 4.1e-136 488.0 245 100.0
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 4.5e-122 441.4 245 92.7
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 1.9e-120 436.0 245 91.4
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.8e-115 419.5 268 81.7
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 1.8e-110 402.9 268 79.5
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 4.6e-103 378.3 246 80.5
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.3e-102 376.7 258 77.5
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 5.5e-88 328.2 190 83.7
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 2.1e-87 326.2 237 70.9
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 6.1e-87 324.7 222 73.4
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 6.1e-87 324.7 222 73.4
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 1.1e-85 320.5 225 69.8
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 1.3e-84 317.0 219 74.4
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 4.8e-84 315.1 234 71.8
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 1.1e-83 313.9 213 72.8
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 5.3e-83 311.6 222 70.7
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 9.1e-83 310.8 192 78.1
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 2.0e-82 309.7 198 76.8
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 5.9e-82 308.1 188 78.7
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 5.9e-82 308.1 211 71.1
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 7.7e-82 307.8 219 72.1
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 7.7e-82 307.8 195 76.4
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 2.9e-81 305.8 221 69.7
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 6.5e-81 304.7 209 71.3
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 8.5e-81 304.3 193 76.7
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.4e-80 303.5 189 77.8
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 1.9e-80 303.1 187 76.5
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 2.5e-80 302.8 187 78.6
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 3.2e-80 302.4 209 70.8
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 9.4e-80 300.8 207 71.0
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 9.4e-80 300.8 202 70.8
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 7.9e-79 297.7 187 76.5
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 1.0e-78 297.4 176 80.1
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 1.0e-78 297.4 211 69.2
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.0e-78 297.4 211 69.2
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 1.0e-78 297.4 223 67.7
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 1.0e-78 297.4 200 73.0
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 1.8e-78 296.6 247 63.2
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 1.8e-78 296.6 211 70.6
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 2.3e-78 296.2 205 70.7
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 2.3e-78 296.2 226 66.8
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 2.3e-78 296.2 224 67.9
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 3.0e-78 295.8 236 64.8
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 3.9e-78 295.4 205 70.2
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 6.7e-78 294.7 208 70.2
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 1.1e-77 293.9 190 75.8
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.5e-77 293.5 205 69.8
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 2.0e-77 293.1 215 68.8
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 2.0e-77 293.1 219 67.6
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 2.0e-77 293.1 236 64.8
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 2.6e-77 292.7 219 67.6
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 3.3e-77 292.4 187 73.8
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 5.7e-77 291.6 227 67.4
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 7.4e-77 291.2 205 68.8
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 9.7e-77 290.8 253 61.7
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 9.7e-77 290.8 243 63.0
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 9.7e-77 290.8 215 67.0
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 9.7e-77 290.8 214 67.3
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 3.7e-76 288.9 163 81.0
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 3.7e-76 288.9 228 66.7
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 8.2e-76 287.7 172 78.5
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.1e-75 287.3 206 69.4
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 1.4e-75 287.0 190 71.6
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 5.3e-75 285.0 190 70.5
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 5.3e-75 285.0 228 63.6
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 1.6e-74 283.5 189 72.0
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 4.5e-74 282.0 238 61.8
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 5.9e-74 281.6 237 65.4
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 1.3e-73 280.4 238 59.2
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 1.3e-73 280.4 191 70.7
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 2.2e-73 279.6 219 63.0
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 2.9e-73 279.3 238 59.2
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 2.9e-73 279.3 204 66.2
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 3.8e-73 278.9 238 58.4
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 3.8e-73 278.9 199 65.3
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 3.8e-73 278.9 238 58.4
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 3.8e-73 278.9 238 58.4
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 3.8e-73 278.9 199 65.3
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 6.5e-73 278.1 156 82.7
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 1.5e-72 276.9 189 70.4
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 1.5e-72 276.9 243 58.4
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 1.5e-72 276.9 243 58.4
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 1.9e-72 276.6 237 57.4
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 2.5e-72 276.2 236 61.9
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 4.2e-72 275.4 243 58.4
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 4.2e-72 275.4 244 58.2
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 9.4e-72 274.2 244 59.0
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 1.2e-71 273.9 244 58.2
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 1.2e-71 273.9 219 63.5
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 3.6e-71 272.3 219 60.7
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 8.0e-71 271.2 238 56.7
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 3.0e-70 269.2 238 56.3
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 4.0e-70 268.9 239 55.6
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 8.2e-68 261.2 180 67.8
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 8.2e-68 261.2 222 60.4
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 9.1e-67 257.7 191 66.0
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 4.5e-66 255.4 204 65.7
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 1.6e-58 230.3 185 56.8
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 1.1e-56 224.2 122 85.2
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 3.2e-56 222.6 200 63.0
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 9.5e-56 221.1 196 58.7
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.2e-55 220.7 165 64.8
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 8.3e-52 208.0 164 58.5
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 1.4e-51 207.2 209 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 5.4e-51 205.3 169 53.8
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 7.0e-51 204.9 171 51.5
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.2e-50 204.1 141 73.0
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 8.6e-49 198.0 131 74.0
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.1e-48 197.6 121 78.5
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 1.9e-48 196.8 137 72.3
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 2.6e-45 186.4 112 77.7
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 2.0e-37 160.2 130 63.1
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 3.5e-34 149.4 94 78.7
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 1.5e-29 134.0 173 38.2
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 5.6e-24 115.5 200 37.0
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 3.6e-23 112.8 263 31.2
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 1.3e-17 94.4 203 31.5
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 6.6e-17 92.0 68 67.6
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 4.3e-16 89.4 256 25.8
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.6e-10 70.9 227 25.6
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 3.0e-09 66.6 181 26.5
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 6.6e-09 65.5 175 25.7
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 8.7e-09 65.1 205 23.9
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 8.7e-09 65.1 236 25.4
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 1.1e-08 64.7 172 25.6
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.1e-08 64.7 205 25.4
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 1.5e-08 64.3 221 22.6
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.5e-08 64.3 205 22.9
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.9e-08 63.9 191 24.6
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 2.5e-08 63.5 195 27.2
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 3.3e-08 63.2 172 22.7
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 3.3e-08 63.2 233 24.0
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 3.3e-08 63.2 194 25.3
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 4.3e-08 62.8 233 24.5
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 4.3e-08 62.8 231 24.7
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 5.6e-08 62.4 183 24.0
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 5.6e-08 62.4 234 25.2
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 5.6e-08 62.4 227 21.6
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 5.6e-08 62.4 172 24.4
Cre11.g478850 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 7.3e-08 62.0 203 25.1
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 7.3e-08 62.0 217 22.6
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 7.3e-08 62.0 207 21.7
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 7.3e-08 62.0 238 25.6
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 9.6e-08 61.6 201 24.4
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.3e-07 61.2 217 23.0
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.3e-07 61.2 172 23.8
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.6e-07 60.8 172 26.2
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 1.6e-07 60.8 172 26.2
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 1.6e-07 60.8 205 23.9
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 3.6e-07 59.7 211 22.3
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 3.6e-07 59.7 181 23.2
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 3.6e-07 59.7 218 22.9
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 4.8e-07 59.3 172 22.1
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 4.8e-07 59.3 174 26.4
arahy.Tifrunner.gnm1.ann1.TN3NK4 Arachis hypogaea HOM05D006358 ORTHO05D008185 6.2e-07 58.9 170 26.5
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 6.2e-07 58.9 231 23.4
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 6.2e-07 58.9 246 22.4
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 6.2e-07 58.9 215 26.5
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 6.2e-07 58.9 196 23.0
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 8.1e-07 58.5 182 26.4
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 8.1e-07 58.5 172 22.7
ATR0807G171 Amborella trichopoda HOM05D006358 ORTHO05D008185 1.1e-06 58.2 169 25.4
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 1.1e-06 58.2 191 24.6
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 1.1e-06 58.2 238 25.6
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 1.8e-06 57.4 203 22.7
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 1.8e-06 57.4 251 23.5
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 1.8e-06 57.4 228 25.4
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 2.4e-06 57.0 216 25.0
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 4.0e-06 56.2 216 21.3
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 4.0e-06 56.2 235 21.3
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 4.0e-06 56.2 193 23.3
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 4.0e-06 56.2 207 21.7
Hund07562 Selenicereus undatus HOM05D006358 ORTHO05D008185 4.0e-06 56.2 160 26.9
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 5.3e-06 55.8 191 28.8
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 5.3e-06 55.8 198 23.7
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 6.9e-06 55.5 214 21.5
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 6.9e-06 55.5 237 21.9
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 6.9e-06 55.5 207 21.7
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 6.9e-06 55.5 229 22.3
AagrBONN_evm.TU.Sc2ySwM_228.2193 Anthoceros agrestis HOM05D003483 ORTHO05D004101 9.0e-06 55.1 212 22.2


User provided reference genes

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