Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 7.1e-142 507.7 344 100.0
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 7.4e-115 417.9 350 82.3
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 9.0e-113 411.0 344 74.4
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.4e-108 397.1 318 87.4
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.3e-106 388.3 344 75.6
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-102 377.5 342 79.8
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 9.1e-97 357.8 356 62.6
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 3.7e-74 282.7 371 55.5
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.2e-72 277.7 368 51.4
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 2.3e-71 273.5 361 50.7
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.9e-71 273.1 354 53.4
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 2.8e-69 266.5 355 53.0
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.8e-68 263.8 374 54.0
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.0e-67 260.4 355 50.1
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 2.0e-67 260.4 372 56.5
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 2.6e-67 260.0 357 52.7
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 7.5e-67 258.5 359 52.9
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 7.5e-67 258.5 353 49.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.9e-66 256.5 359 55.2
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 4.9e-66 255.8 351 50.1
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.4e-65 254.2 356 53.9
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 7.0e-65 251.9 355 51.5
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 9.2e-65 251.5 365 45.5
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 1.2e-64 251.1 364 55.5
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 1.6e-64 250.8 366 60.4
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 3.5e-64 249.6 368 53.8
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 4.6e-64 249.2 360 50.3
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 3.0e-63 246.5 362 50.3
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 5.0e-63 245.7 357 49.6
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 6.6e-63 245.4 346 46.2
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 2.5e-62 243.4 347 47.3
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 5.6e-62 242.3 348 55.5
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 7.3e-62 241.9 351 50.7
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 7.3e-62 241.9 360 44.7
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 9.5e-62 241.5 352 46.9
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.6e-61 240.7 372 54.0
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.1e-61 240.4 348 51.4
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 2.1e-61 240.4 360 52.8
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.7e-61 239.2 359 44.3
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.3e-60 236.9 364 47.5
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.3e-60 236.9 364 44.2
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.1e-60 236.5 359 52.6
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 4.0e-60 236.1 356 55.6
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 8.9e-60 235.0 365 47.7
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 8.9e-60 235.0 365 45.8
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 8.9e-60 235.0 366 47.5
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.2e-59 234.6 347 45.5
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 2.6e-59 233.4 341 56.3
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.6e-59 233.4 364 48.1
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 5.8e-59 232.3 343 47.8
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 5.8e-59 232.3 377 49.3
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 7.5e-59 231.9 373 49.3
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 2.9e-58 229.9 350 51.4
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.9e-58 229.9 360 46.1
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 3.7e-58 229.6 378 46.8
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 4.9e-58 229.2 363 50.4
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 4.9e-58 229.2 353 57.5
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 6.4e-58 228.8 375 46.9
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 8.3e-58 228.4 352 46.0
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.4e-57 227.6 358 43.3
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 1.4e-57 227.6 361 46.3
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.9e-57 227.3 345 46.1
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.4e-57 226.9 359 50.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.2e-56 224.6 377 49.1
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.6e-56 224.2 360 47.8
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 2.7e-56 223.4 360 47.8
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 7.8e-56 221.9 362 47.2
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.0e-55 221.5 346 47.1
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.3e-55 221.1 352 44.3
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-55 221.1 321 47.4
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.3e-55 220.3 362 48.1
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.1e-54 218.0 346 46.0
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.5e-54 217.6 237 56.5
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 8.1e-53 211.8 349 46.4
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.1e-52 211.5 356 46.1
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.4e-52 211.1 240 52.5
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-51 207.6 339 44.5
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-51 207.6 339 44.5
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.5e-51 207.6 339 44.5
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 2.0e-51 207.2 363 47.1
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 7.5e-51 205.3 350 38.9
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 8.3e-50 201.8 163 65.6
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 8.3e-50 201.8 347 48.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.1e-49 201.4 359 41.8
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.4e-49 201.1 367 49.6
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.4e-49 201.1 358 47.5
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 3.2e-49 199.9 333 43.8
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 4.1e-49 199.5 349 46.1
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 9.2e-49 198.4 369 44.2
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.1e-48 197.2 226 53.5
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.5e-48 196.4 223 53.8
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 6.0e-48 195.7 337 48.1
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.0e-47 194.9 371 44.7
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.0e-47 194.9 372 38.2
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 3.9e-47 193.0 226 51.8
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 4.3e-46 189.5 347 47.8
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 9.5e-46 188.3 338 39.1
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.4e-44 184.5 337 46.9
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.5e-43 181.0 348 43.7
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 2.0e-43 180.6 229 46.7
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 3.4e-43 179.9 304 43.8
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 5.8e-43 179.1 339 44.5
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 5.8e-43 179.1 345 48.4
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 7.6e-43 178.7 340 46.5
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.3e-42 177.9 362 43.6
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 2.2e-42 177.2 358 41.3
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 5.4e-41 172.6 296 59.1
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 5.4e-41 172.6 361 49.9
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 7.1e-41 172.2 344 43.9
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 9.2e-41 171.8 351 41.0
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.2e-40 171.4 359 46.5
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 3.5e-40 169.9 339 39.8
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 3.5e-40 169.9 182 51.1
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.7e-39 167.5 348 44.8
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.3e-39 167.2 339 41.9
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 6.6e-39 165.6 337 39.5
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 6.6e-39 165.6 351 44.4
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 8.6e-39 165.2 358 45.0
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 3.3e-38 163.3 337 40.1
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 4.3e-38 162.9 355 41.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 5.6e-38 162.5 290 45.2
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 7.3e-38 162.2 355 47.0
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 7.3e-38 162.2 339 40.1
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 7.3e-38 162.2 355 47.0
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 7.3e-38 162.2 355 47.0
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 7.3e-38 162.2 339 40.1
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 7.3e-38 162.2 353 36.3
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 9.6e-38 161.8 338 36.4
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.2e-37 161.4 337 39.2
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.2e-37 161.4 340 44.1
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 3.6e-37 159.8 339 35.1
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 6.2e-37 159.1 346 37.0
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-36 157.5 336 37.5
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-36 157.5 336 37.5
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 1.8e-36 157.5 336 37.5
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 2.4e-36 157.1 336 38.1
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 3.4e-35 153.3 349 32.7
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 3.4e-35 153.3 348 35.3
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 5.8e-35 152.5 166 49.4
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.9e-34 150.2 341 39.6
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 2.9e-34 150.2 356 33.1
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 6.4e-34 149.1 232 40.9
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 3.5e-32 143.3 337 34.7
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 4.6e-32 142.9 146 54.8
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 7.8e-32 142.1 340 31.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 1.0e-31 141.7 334 48.2
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 2.3e-31 140.6 337 34.4
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 2.8e-29 133.7 240 46.7
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.8e-28 131.0 342 30.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-28 131.0 337 32.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.4e-28 130.6 160 46.2
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 6.9e-28 129.0 356 33.4
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 5.8e-27 125.9 384 32.3
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 9.9e-27 125.2 337 30.9
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 3.2e-25 120.2 208 41.8
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 7.1e-25 119.0 159 44.0
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 2.7e-24 117.1 215 40.5
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 3.5e-24 116.7 152 47.4
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 3.9e-23 113.2 351 28.5
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 6.6e-23 112.5 366 30.1
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 6.6e-23 112.5 360 28.9
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.8e-20 104.4 218 35.8
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.0e-20 103.2 204 41.2
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 5.3e-20 102.8 176 38.6
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-17 94.4 94 55.3
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.9e-17 94.4 206 43.2
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 3.5e-16 90.1 182 39.0
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 4.6e-16 89.7 166 42.2
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.9e-07 60.1 186 28.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 8.7e-07 58.9 241 24.9
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-06 57.8 49 51.0
ATR0153G003 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.3e-06 57.0 52 51.9


User provided reference genes

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