Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 0.0e+00 1459.9 790 100.0
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 0.0e+00 1369.4 801 92.3
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 0.0e+00 1241.1 793 86.4
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 0.0e+00 1096.6 877 72.1
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.6e-309 1065.1 798 74.7
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.3e-297 1025.4 798 74.8
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 2.9e-284 981.9 808 69.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 1.5e-187 660.6 796 51.0
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 2.2e-183 646.7 686 52.9
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 5.2e-180 635.6 679 54.1
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.2e-176 624.4 707 49.4
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.3e-175 620.9 633 56.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.9e-175 619.8 785 48.8
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 4.1e-161 572.8 665 48.4
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.5e-158 563.5 794 43.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.0e-155 553.9 880 42.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 3.0e-151 540.0 722 47.1
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 3.3e-150 536.6 751 45.8
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.3e-142 510.0 716 45.5
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.3e-138 498.0 970 38.5
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 7.1e-137 492.3 791 45.6
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 9.3e-137 491.9 745 44.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.6e-135 485.7 675 43.9
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.1e-132 478.4 734 45.2
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.4e-132 477.2 678 43.5
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 6.9e-132 475.7 697 42.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.7e-130 471.1 770 43.8
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 8.4e-130 468.8 696 41.5
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.1e-128 464.2 645 44.0
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.5e-126 457.2 752 43.8
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 5.6e-126 456.1 789 44.2
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 7.4e-126 455.7 811 40.9
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.8e-125 453.8 787 43.1
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.6e-125 453.4 787 43.1
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 6.2e-125 452.6 774 43.3
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 3.1e-124 450.3 817 38.6
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.9e-124 449.1 826 43.3
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 9.0e-124 448.7 829 43.1
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 3.4e-123 446.8 769 42.3
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.3e-122 444.9 855 42.2
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.7e-122 444.5 734 43.1
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.1e-121 441.8 805 40.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.9e-121 441.0 739 42.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 2.1e-120 437.6 885 37.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.3e-119 434.9 842 36.7
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.3e-119 434.9 671 44.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.8e-119 434.5 804 40.9
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 4.8e-117 426.4 822 41.2
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 5.3e-116 422.9 896 38.5
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 7.1e-113 412.5 803 38.2
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 2.7e-112 410.6 788 38.2
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.8e-111 407.9 807 39.2
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 3.0e-111 407.1 785 38.7
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.9e-110 404.4 827 40.7
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.5e-110 404.1 836 37.4
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 7.4e-110 402.5 824 36.9
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.6e-109 401.4 828 36.7
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 3.7e-109 400.2 770 38.3
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 6.3e-109 399.4 763 38.0
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 3.4e-107 393.7 826 37.8
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 5.0e-106 389.8 847 36.4
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.0e-106 389.8 832 36.4
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 6.5e-106 389.4 667 38.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.1e-105 388.7 813 37.5
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.4e-105 388.3 699 41.5
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.4e-105 388.3 799 37.7
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 2.1e-104 384.4 814 37.8
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.1e-104 384.4 693 37.7
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 3.6e-104 383.6 774 36.8
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.1e-102 378.6 753 40.1
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 7.4e-102 375.9 686 37.8
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.8e-101 373.2 587 39.9
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 8.2e-101 372.5 688 40.1
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 8.2e-101 372.5 707 39.3
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 5.3e-100 369.8 718 37.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.6e-99 367.5 896 33.8
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 7.7e-99 365.9 705 36.9
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 7.7e-99 365.9 786 33.6
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.7e-98 364.8 762 36.5
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.7e-98 364.8 684 37.6
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 2.2e-98 364.4 964 32.5
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.8e-98 363.6 812 34.2
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.9e-97 361.3 667 37.6
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.5e-97 359.8 739 35.2
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.2e-97 359.4 738 35.4
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.0e-95 355.5 826 34.6
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.0e-94 351.3 879 34.9
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.7e-93 347.1 793 32.7
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 8.2e-93 345.9 700 36.6
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 5.3e-92 343.2 680 35.0
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 5.3e-92 343.2 673 37.0
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 2.6e-91 340.9 708 36.6
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 4.5e-91 340.1 709 36.5
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 4.5e-91 340.1 708 36.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 7.7e-91 339.3 718 36.5
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.2e-90 337.8 805 34.3
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.4e-89 335.1 903 33.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.4e-89 335.1 718 34.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.2e-89 333.6 698 36.7
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.5e-89 333.2 664 37.3
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 9.4e-89 332.4 728 36.4
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 3.0e-87 327.4 744 38.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 5.2e-87 326.6 772 33.9
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-82 312.4 645 39.8
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 5.0e-82 310.1 758 33.5
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 8.5e-82 309.3 663 37.3
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 4.2e-81 307.0 928 28.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-79 301.2 950 27.9
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.0e-79 300.8 355 55.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.7e-75 287.7 744 31.9
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 3.6e-72 277.3 685 31.5
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.0e-63 249.2 736 28.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 6.8e-63 246.5 741 27.9
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.8e-61 241.1 793 29.4
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 4.5e-59 233.8 585 32.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 7.3e-57 226.5 276 50.7
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.4e-55 222.2 310 45.2
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 5.2e-55 220.3 428 45.6
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 7.8e-51 206.5 276 42.8
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.4e-46 191.0 271 45.4
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 3.2e-44 184.5 487 33.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.7e-42 178.7 174 50.6
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.5e-41 175.6 228 42.5
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.3e-41 174.5 660 26.2
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 5.6e-41 173.7 179 50.8
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.3e-39 168.3 153 58.2
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 3.9e-34 151.0 151 56.3
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 3.8e-29 134.4 227 41.0
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.6e-27 129.0 272 33.1
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 7.3e-25 120.2 147 49.0
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 9.0e-23 113.2 165 38.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.9e-21 107.5 199 34.7
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 1.1e-20 106.3 65 76.9
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 2.7e-19 101.7 773 25.4
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 5.6e-17 94.0 328 26.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.1e-15 89.7 331 27.5
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 3.8e-13 81.3 209 30.6
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 2.1e-11 75.5 75 54.7
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.1e-07 61.6 92 38.0
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 5.8e-06 57.4 63 50.8
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 5.8e-06 57.4 62 48.4


User provided reference genes

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