Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.3e-173 612.1 300 100.0
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.0e-165 586.6 300 96.0
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 1.4e-165 586.3 300 96.0
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.3e-144 515.8 295 87.1
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.2e-142 510.0 300 85.3
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 1.7e-131 473.0 280 83.2
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 1.7e-128 463.0 314 78.3
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 2.6e-124 449.1 291 75.6
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 9.3e-122 440.7 292 75.3
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 7.9e-121 437.6 292 75.0
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 8.1e-118 427.6 292 74.0
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.0e-115 420.6 293 72.7
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 3.8e-115 418.7 293 72.4
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 9.3e-114 414.1 293 72.0
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 8.5e-91 337.8 295 61.0
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 1.1e-90 337.4 295 60.0
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 2.5e-90 336.3 307 58.6
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 7.2e-90 334.7 293 59.4
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 9.4e-90 334.3 293 58.7
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 1.6e-89 333.6 297 60.9
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 7.9e-89 331.3 299 58.5
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 9.7e-87 324.3 294 59.9
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 3.7e-86 322.4 300 59.0
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.4e-85 320.5 295 59.3
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 4.1e-85 318.9 291 60.5
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 5.3e-85 318.5 303 59.4
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 7.0e-85 318.2 298 59.1
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 3.5e-84 315.8 311 58.2
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 5.9e-84 315.1 243 67.9
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 1.3e-83 313.9 298 56.4
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 3.8e-83 312.4 297 59.3
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 6.5e-83 311.6 292 58.6
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 6.5e-83 311.6 294 58.2
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 1.9e-82 310.1 300 58.3
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 3.2e-82 309.3 261 61.7
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 4.2e-82 308.9 297 59.6
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 7.2e-82 308.1 294 58.2
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.2e-81 307.4 294 58.2
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 1.2e-81 307.4 294 58.2
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 2.1e-81 306.6 308 58.1
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 2.7e-81 306.2 291 56.0
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 2.0e-79 300.1 329 55.3
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 3.3e-79 299.3 339 49.9
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 4.4e-79 298.9 300 54.0
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 1.1e-77 294.3 296 54.7
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-77 293.9 296 54.7
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 1.8e-77 293.5 296 53.4
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 2.4e-77 293.1 300 56.7
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.1e-77 292.7 290 53.8
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 7.0e-77 291.6 287 56.1
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 7.0e-77 291.6 296 54.4
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 3.5e-76 289.3 296 52.7
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 2.2e-75 286.6 298 53.7
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 3.8e-75 285.8 253 60.1
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 1.1e-74 284.3 298 54.4
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 1.5e-74 283.9 296 55.1
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.2e-74 282.7 290 51.7
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 4.2e-74 282.3 293 51.9
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 5.5e-74 282.0 302 53.6
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 7.2e-74 281.6 246 58.1
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 1.2e-73 280.8 249 58.2
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 1.6e-73 280.4 306 52.0
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 4.7e-73 278.9 294 52.7
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 4.7e-73 278.9 280 55.4
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 6.1e-73 278.5 297 51.5
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.0e-72 277.7 296 53.7
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 1.8e-72 276.9 296 53.4
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 1.8e-72 276.9 249 57.0
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 1.5e-71 273.9 287 55.1
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 2.0e-71 273.5 248 58.5
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 2.6e-71 273.1 303 51.5
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 5.7e-71 271.9 259 57.5
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 7.5e-71 271.6 251 57.8
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.2e-70 270.0 297 52.2
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.2e-70 270.0 297 52.9
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 2.8e-70 269.6 256 58.2
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 3.7e-70 269.2 298 52.0
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 1.4e-69 267.3 244 58.2
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 2.4e-69 266.5 263 57.4
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 3.5e-68 262.7 303 51.5
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 3.5e-68 262.7 309 51.5
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 4.5e-68 262.3 292 50.7
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 5.9e-68 261.9 250 56.8
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 5.9e-68 261.9 254 57.1
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 1.7e-67 260.4 254 56.3
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 2.2e-67 260.0 257 54.9
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 3.8e-67 259.2 239 55.2
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 5.0e-67 258.8 250 56.0
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 6.5e-67 258.5 250 54.4
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 6.5e-67 258.5 253 55.7
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 1.1e-66 257.7 251 56.2
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 2.5e-66 256.5 248 56.9
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 2.5e-66 256.5 248 56.9
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 7.2e-66 255.0 248 54.0
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 1.8e-64 250.4 258 53.9
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-64 250.0 258 54.3
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 4.0e-64 249.2 258 54.3
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 1.5e-63 247.3 259 54.1
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 1.5e-63 247.3 301 48.2
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 7.5e-63 245.0 258 54.3
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 7.5e-63 245.0 280 50.7
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 2.2e-62 243.4 305 45.6
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 8.3e-62 241.5 284 48.6
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 7.0e-61 238.4 284 48.2
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 3.8e-59 232.6 301 46.5
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.9e-58 230.3 241 52.3
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 3.3e-58 229.6 316 44.6
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 3.0e-56 223.0 293 45.7
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 6.8e-56 221.9 263 48.7
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 2.9e-54 216.5 263 48.3
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 2.9e-54 216.5 225 53.8
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 1.2e-52 211.1 281 44.1
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 1.0e-51 208.0 261 47.9
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 1.7e-51 207.2 264 46.2
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 2.3e-51 206.8 241 45.6
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 3.9e-51 206.1 298 41.3
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 1.9e-50 203.8 277 45.1
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 2.5e-50 203.4 277 45.1
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 4.7e-49 199.1 249 45.8
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 4.7e-49 199.1 309 41.1
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 1.4e-48 197.6 257 43.2
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 9.8e-47 191.4 280 41.4
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 9.8e-47 191.4 280 41.4
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 1.3e-46 191.0 234 47.0
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 6.4e-46 188.7 250 47.2
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.4e-45 187.6 158 63.3
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 7.8e-44 181.8 210 48.6
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 7.5e-39 165.2 234 40.2
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 9.8e-39 164.9 250 39.6
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 8.3e-38 161.8 253 38.7
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 7.1e-37 158.7 216 41.7
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 2.5e-34 150.2 202 43.1
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 1.1e-32 144.8 232 37.5
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 8.9e-32 141.7 186 45.7
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 5.8e-31 139.0 198 42.4
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 1.1e-29 134.8 160 46.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.4e-29 134.4 199 38.2
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 2.4e-29 133.7 233 36.1
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 3.2e-29 133.3 104 64.4
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 7.1e-29 132.1 191 44.0
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 2.1e-28 130.6 166 45.2
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 1.2e-23 114.8 156 42.3
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 3.5e-20 103.2 116 50.0
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 3.0e-19 100.1 163 42.9
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 1.7e-06 57.8 97 36.1
Sabra07G0062800 Salix brachista HOM05D004393 ORTHO05D004897 6.4e-06 55.8 50 54.0


User provided reference genes

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