Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 8.5e-181 637.1 377 100.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 5.7e-169 597.8 370 93.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 3.6e-163 578.6 375 91.7
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.2e-161 573.5 406 83.0
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.5e-156 556.6 353 91.5
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.4e-152 541.2 368 87.8
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.9e-135 486.5 378 77.0
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 5.1e-133 478.4 384 74.7
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 5.1e-133 478.4 355 80.3
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 7.3e-132 474.6 382 73.3
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 5.2e-130 468.4 269 91.8
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 5.8e-129 464.9 378 73.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 4.9e-128 461.8 357 77.3
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 3.5e-126 455.7 381 71.9
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 6.0e-126 454.9 304 78.6
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 7.8e-126 454.5 382 72.0
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 3.0e-125 452.6 362 75.7
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.9e-124 449.9 264 90.2
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.8e-123 446.0 383 72.1
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.8e-122 443.4 354 73.7
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.4e-122 443.0 387 73.9
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.4e-122 443.0 362 72.1
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.2e-121 440.7 362 72.7
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 2.6e-121 439.5 360 72.5
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 2.9e-120 436.0 299 79.6
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 6.4e-120 434.9 361 73.4
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.4e-119 433.7 358 68.2
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.4e-119 433.0 390 71.8
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 4.2e-119 432.2 323 72.8
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 2.1e-118 429.9 357 73.9
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 4.6e-118 428.7 358 72.6
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 2.3e-117 426.4 361 69.0
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.0e-117 426.0 357 72.3
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.5e-116 423.7 357 73.4
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.9e-116 423.3 359 68.8
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 3.3e-116 422.5 321 72.9
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 7.3e-116 421.4 300 75.7
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 7.3e-116 421.4 322 72.4
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.6e-115 420.2 380 67.4
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 3.6e-115 419.1 324 71.3
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 4.8e-115 418.7 352 70.5
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 3.1e-114 416.0 357 71.4
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 3.1e-114 416.0 301 74.1
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 3.1e-114 416.0 359 65.2
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 5.3e-114 415.2 383 69.2
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 6.9e-114 414.8 365 69.0
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 5.8e-113 411.8 359 70.2
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 3.8e-112 409.1 308 72.1
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 4.9e-112 408.7 266 80.5
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.1e-111 407.5 302 71.9
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.1e-111 407.5 356 69.9
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.4e-111 407.1 380 64.2
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.9e-111 406.8 364 65.9
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 5.4e-111 405.2 303 74.3
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 7.1e-111 404.8 360 66.7
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.6e-110 403.7 303 73.9
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 3.5e-110 402.5 302 72.5
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 6.0e-110 401.7 380 63.9
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 6.0e-110 401.7 303 73.9
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 8.7e-109 397.9 300 71.3
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 8.7e-109 397.9 304 71.1
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.6e-107 393.7 359 63.8
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 6.9e-106 388.3 391 60.9
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 1.5e-105 387.1 358 67.9
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 2.0e-105 386.7 324 67.3
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.6e-105 386.3 358 68.2
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.4e-105 386.0 381 62.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 5.8e-105 385.2 301 71.1
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 7.6e-105 384.8 293 72.0
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 7.6e-105 384.8 310 70.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.3e-104 384.0 362 65.7
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.7e-104 383.6 301 70.8
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.9e-103 380.2 375 63.7
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.2e-103 379.4 301 70.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 7.1e-103 378.3 295 69.2
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.2e-102 377.5 277 72.9
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 2.1e-102 376.7 361 67.0
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 3.0e-101 372.9 375 64.0
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.9e-101 372.5 360 64.2
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.6e-99 367.1 358 62.6
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 2.1e-99 366.7 303 69.3
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.1e-99 366.7 302 67.2
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.5e-97 360.5 303 67.7
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 4.9e-96 355.5 306 71.9
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.6e-94 350.5 319 64.3
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.7e-94 349.7 363 62.0
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 3.5e-94 349.4 300 67.3
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 4.6e-94 349.0 361 61.2
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 6.0e-94 348.6 370 61.6
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.0e-93 347.8 354 58.2
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.8e-93 347.1 368 61.4
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.3e-93 346.7 301 66.1
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 3.9e-93 345.9 300 66.7
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 5.1e-93 345.5 302 64.9
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 5.1e-93 345.5 370 61.4
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 5.1e-93 345.5 370 61.4
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 1.9e-92 343.6 214 84.6
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 5.0e-88 328.9 319 62.7
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 2.5e-84 316.6 232 72.0
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 5.9e-81 305.4 247 68.8
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.9e-80 303.1 246 69.9
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 3.8e-80 302.8 192 81.2
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.2e-75 287.0 194 74.7
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.6e-70 270.8 298 55.0
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 2.2e-64 250.4 215 61.4
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.5e-63 246.9 210 67.6
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 3.2e-63 246.5 216 59.7
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 3.2e-63 246.5 215 62.3
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.2e-62 244.6 224 59.8
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.2e-62 244.6 242 64.0
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 2.4e-58 230.3 294 47.3
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 5.3e-58 229.2 246 52.8
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.0e-57 227.3 232 55.6
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 2.7e-54 216.9 302 45.7
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 4.7e-46 189.5 171 63.7
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 8.0e-46 188.7 215 54.0
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 5.4e-42 176.0 198 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.0e-41 174.1 240 45.4
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.5e-39 167.9 262 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.1e-38 162.5 271 40.6
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 2.8e-30 137.1 170 65.9
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 8.0e-30 135.6 105 68.6
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 4.4e-28 129.8 156 49.4
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.7e-24 117.9 87 67.8
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 3.9e-24 116.7 194 43.8
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 4.0e-21 106.7 69 81.2
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.6e-20 104.0 97 56.7
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-16 91.7 152 40.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-16 91.3 133 44.4
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 2.5e-15 87.4 160 46.9
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 1.1e-13 82.0 44 97.7
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 3.1e-13 80.5 232 36.2
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.0e-12 77.8 72 75.0
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 6.4e-11 72.8 46 76.1
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 6.4e-11 72.8 116 42.2
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-10 71.6 119 38.7
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 4.1e-10 70.1 44 75.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 5.4e-10 69.7 39 84.6
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 5.4e-10 69.7 39 84.6
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 5.4e-10 69.7 39 84.6
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 9.2e-10 68.9 69 50.7
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 3.5e-09 67.0 39 82.1
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 4.6e-09 66.6 127 38.6
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 1.0e-08 65.5 113 41.6
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 2.5e-07 60.8 41 78.0
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 3.3e-07 60.5 54 61.1
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 4.3e-07 60.1 59 50.8
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 5.6e-07 59.7 40 80.0
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 5.6e-07 59.7 40 80.0
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 5.6e-07 59.7 40 80.0
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 5.6e-07 59.7 45 73.3
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-06 57.4 44 63.6
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 2.8e-06 57.4 103 37.9


User provided reference genes

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