Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 1.7e-96 355.9 169 100.0
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 1.8e-90 335.9 169 92.3
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 4.0e-90 334.7 169 92.3
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 2.2e-67 259.2 170 76.5
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.8e-66 256.1 170 72.9
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.4e-63 246.5 170 71.2
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 1.2e-33 147.1 172 50.6
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 5.9e-33 144.8 171 50.3
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 7.8e-33 144.4 168 47.6
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 2.9e-32 142.5 169 47.3
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 1.6e-30 136.7 169 46.2
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 2.1e-30 136.3 168 47.0
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 5.2e-29 131.7 170 44.7
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 1.5e-28 130.2 169 46.2
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 3.4e-28 129.0 170 44.7
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 3.4e-28 129.0 169 42.6
CAN.G635.24 Capsicum annuum HOM05D008031 ORTHO05D010063 5.8e-28 128.3 169 45.0
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 7.5e-28 127.9 169 46.2
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 7.5e-28 127.9 169 46.2
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.9e-27 125.9 168 47.0
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 3.7e-27 125.6 204 41.2
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.4e-26 122.9 172 47.1
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 4.1e-26 122.1 169 44.4
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 2.0e-25 119.8 169 42.0
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 2.7e-25 119.4 170 45.9
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 2.7e-25 119.4 169 43.8
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 6.0e-25 118.2 171 43.3
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.7e-24 116.7 169 42.0
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 3.0e-24 115.9 169 43.2
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 3.0e-24 115.9 173 42.8
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 3.9e-24 115.5 169 39.6
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 5.0e-24 115.2 169 43.2
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 5.0e-24 115.2 172 43.0
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 8.6e-24 114.4 169 45.6
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 8.6e-24 114.4 169 45.6
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 2.5e-23 112.8 167 40.7
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 2.5e-23 112.8 167 40.7
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 2.5e-23 112.8 167 40.7
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 5.6e-23 111.7 171 42.1
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 9.5e-23 110.9 170 40.0
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 9.5e-23 110.9 169 40.8
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 3.6e-22 109.0 170 40.6
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 3.6e-22 109.0 171 41.5
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 4.7e-22 108.6 171 40.9
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 8.0e-22 107.8 169 39.1
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 1.1e-21 107.5 151 46.4
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.4e-21 107.1 167 38.9
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.4e-21 107.1 169 39.1
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 3.1e-21 105.9 177 42.4
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 5.2e-21 105.1 171 39.8
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.2e-21 105.1 169 39.6
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 8.9e-21 104.4 153 43.1
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 8.9e-21 104.4 175 39.4
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 1.2e-20 104.0 167 37.1
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 9.8e-20 100.9 170 39.4
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 9.8e-20 100.9 169 36.1
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 1.3e-19 100.5 151 42.4
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 4.9e-19 98.6 169 40.2
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 2.4e-18 96.3 160 41.9
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 7.0e-18 94.7 167 38.9
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 1.6e-17 93.6 168 37.5
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 2.1e-17 93.2 152 39.5
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 2.1e-17 93.2 169 35.5
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 2.7e-17 92.8 174 39.7
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 3.5e-17 92.4 142 41.5
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 1.0e-16 90.9 170 38.8
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 1.7e-16 90.1 176 39.8
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 3.9e-16 89.0 176 38.1
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 2.5e-15 86.3 160 36.9
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 9.5e-15 84.3 113 46.9
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 1.2e-14 84.0 162 38.3
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 1.6e-14 83.6 146 39.7
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 6.2e-14 81.6 176 35.8
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 1.4e-13 80.5 155 34.8
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 6.8e-13 78.2 173 34.1
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.2e-12 77.4 177 35.6
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 5.8e-12 75.1 158 39.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.7e-11 72.4 168 33.3
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.4e-10 70.5 179 29.6
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.9e-10 70.1 179 30.7
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.2e-10 69.3 188 32.4
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 1.2e-09 67.4 170 32.9
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 3.5e-09 65.9 189 29.6
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.5e-09 65.9 189 29.6
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.5e-09 65.9 189 29.6
CDE05G1539 Ceratophyllum demersum HOM05D008031 ORTHO05D010063 4.6e-09 65.5 172 33.7
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.7e-08 63.5 180 29.4
PGSC0003DMG400023256 Solanum tuberosum HOM05D008031 ORTHO05D010063 2.3e-08 63.2 138 33.3
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 3.9e-08 62.4 179 30.7
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 3.9e-08 62.4 184 31.5
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 5.1e-08 62.0 185 29.2
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.1e-07 60.8 170 30.0
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 4.3e-07 58.9 195 27.7
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 5.6e-07 58.5 173 29.5
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 7.3e-07 58.2 192 28.6
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 7.3e-07 58.2 186 27.4
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.5e-07 57.8 193 29.5
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.1e-06 56.6 189 30.2
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 2.8e-06 56.2 191 28.8
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 2.8e-06 56.2 181 28.7
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 2.8e-06 56.2 190 29.5
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 3.6e-06 55.8 182 28.0
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 8.1e-06 54.7 180 30.6
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 8.1e-06 54.7 189 27.5
SEGI_30103 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 8.1e-06 54.7 168 31.0
SEGI_39614 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 8.1e-06 54.7 168 31.0
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 8.1e-06 54.7 193 29.5


User provided reference genes

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