Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009120 Solanum tuberosum HOM05D006590 ORTHO05D008427 0.0e+00 1339.7 671 100.0
Sopen03g023190 Solanum pennellii HOM05D006590 ORTHO05D008427 0.0e+00 1296.6 671 96.4
CAN.G108.67 Capsicum annuum HOM05D006590 ORTHO05D008427 0.0e+00 1200.3 670 89.9
Nitab4.5_0000714g0140 Nicotiana tabacum HOM05D006590 ORTHO05D008427 0.0e+00 1124.0 674 85.0
Peaxi162Scf00550g00546 Petunia axillaris HOM05D006590 ORTHO05D008427 0.0e+00 1111.7 673 84.4
Solyc03g083420.4 Solanum lycopersicum HOM05D006590 ORTHO05D008427 8.6e-301 1036.6 539 94.8
Nitab4.5_0007081g0010 Nicotiana tabacum HOM05D006590 ORTHO05D008427 5.4e-295 1017.3 674 78.3
Oeu041046.1 Olea europaea HOM05D006590 ORTHO05D008427 1.7e-264 916.0 669 68.2
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 6.0e-262 907.5 675 67.3
Actinidia08640 Actinidia chinensis HOM05D006590 ORTHO05D008427 2.0e-257 892.5 674 66.6
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 4.9e-256 887.9 674 66.3
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 1.1e-255 886.7 675 66.8
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 5.4e-255 884.4 672 66.5
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 6.0e-254 880.9 652 67.6
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 1.3e-253 879.8 673 66.1
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 3.0e-253 878.6 677 65.9
Migut.F00225 Erythranthe guttata HOM05D006590 ORTHO05D008427 5.1e-253 877.9 668 65.3
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 5.6e-252 874.4 674 66.3
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 1.1e-250 870.2 666 65.8
SalBow4G1653 Salvia bowleyana HOM05D006590 ORTHO05D008427 2.4e-250 869.0 671 65.6
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 4.0e-250 868.2 578 74.0
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 4.5e-249 864.8 586 72.0
ECA232G3273 Erigeron canadensis HOM05D006590 ORTHO05D008427 6.4e-248 860.9 669 65.6
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 2.4e-247 859.0 674 65.6
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 3.2e-247 858.6 671 64.8
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 5.5e-247 857.8 634 67.5
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 2.7e-246 855.5 677 64.5
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 1.3e-245 853.2 702 62.8
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 3.3e-244 848.6 675 63.7
HanXRQChr09g0250931 Helianthus annuus HOM05D006590 ORTHO05D008427 4.3e-244 848.2 621 67.5
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 1.6e-243 846.3 673 64.6
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.6e-243 846.3 673 64.6
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 4.8e-243 844.7 617 67.7
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 8.2e-243 844.0 609 68.8
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.1e-242 843.6 674 64.4
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 1.4e-242 843.2 673 64.5
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 2.4e-242 842.4 632 67.4
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 2.4e-242 842.4 674 64.2
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 3.1e-242 842.0 634 66.2
RcHm_v2.0_Chr1g0380971 Rosa chinensis HOM05D006590 ORTHO05D008427 5.3e-242 841.3 679 64.8
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 9.0e-242 840.5 633 67.6
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 2.6e-241 839.0 676 62.9
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 3.4e-241 838.6 674 64.2
Cc02_g01670 Coffea canephora HOM05D006590 ORTHO05D008427 1.7e-240 836.3 579 71.0
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.7e-240 836.3 584 71.1
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 1.7e-240 836.3 622 68.2
Lj1g0007393 Lotus japonicus HOM05D006590 ORTHO05D008427 2.9e-240 835.5 629 66.3
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 3.8e-240 835.1 676 62.9
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 1.9e-239 832.8 676 62.7
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 7.1e-239 830.9 676 62.6
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 9.3e-239 830.5 650 64.9
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 1.2e-238 830.1 630 65.9
Lalb_Chr08g0240321 Lupinus albus HOM05D006590 ORTHO05D008427 2.7e-238 828.9 609 67.3
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 6.0e-238 827.8 628 65.8
Medtr3g091290 Medicago truncatula HOM05D006590 ORTHO05D008427 1.3e-237 826.6 613 66.6
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 3.9e-237 825.1 614 66.6
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 6.7e-237 824.3 670 62.4
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 6.7e-237 824.3 610 66.9
AUR62006110 Chenopodium quinoa HOM05D006590 ORTHO05D008427 1.1e-236 823.5 676 63.0
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 1.9e-236 822.8 651 64.4
Nn1g01869 Nelumbo nucifera HOM05D006590 ORTHO05D008427 2.5e-236 822.4 628 66.2
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 7.4e-236 820.8 629 64.7
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 7.4e-236 820.8 671 61.4
AUR62019378 Chenopodium quinoa HOM05D006590 ORTHO05D008427 2.4e-234 815.8 703 59.9
MELO3C008489.2 Cucumis melo HOM05D006590 ORTHO05D008427 3.1e-234 815.5 666 62.9
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 3.1e-234 815.5 648 64.0
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 5.3e-234 814.7 685 62.5
CsaV3_3G027870 Cucumis sativus L. HOM05D006590 ORTHO05D008427 1.2e-233 813.5 666 62.6
SGA_v2.0_scaffold44G16790 Striga asiatica HOM05D006590 ORTHO05D008427 1.5e-233 813.1 671 61.4
VMungo1309G0677 Vigna mungo HOM05D006590 ORTHO05D008427 3.8e-232 808.5 615 65.7
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 6.5e-232 807.7 678 62.2
Thhalv10012882m.g Eutrema salsugineum HOM05D006590 ORTHO05D008427 1.1e-231 807.0 677 61.9
TAR375G1022 Trochodendron aralioides HOM05D006590 ORTHO05D008427 1.9e-231 806.2 645 64.2
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 3.2e-231 805.4 671 61.7
PSO063G2913 Papaver somniferum HOM05D006590 ORTHO05D008427 7.2e-231 804.3 629 63.4
PSO170G2823 Papaver somniferum HOM05D006590 ORTHO05D008427 9.4e-231 803.9 629 63.4
BolC9t57211H Brassica oleracea HOM05D006590 ORTHO05D008427 1.2e-230 803.5 670 62.4
AL8G28150 Arabidopsis lyrata HOM05D006590 ORTHO05D008427 1.8e-229 799.7 674 61.1
BraA10t43179Z Brassica rapa HOM05D006590 ORTHO05D008427 1.8e-229 799.7 670 62.4
CARHR266570 Cardamine hirsuta HOM05D006590 ORTHO05D008427 2.3e-229 799.3 676 60.9
Aa31LG3G9610 Aethionema arabicum HOM05D006590 ORTHO05D008427 1.1e-228 797.0 670 61.5
DCAR_014541 Daucus carota HOM05D006590 ORTHO05D008427 3.3e-228 795.4 612 63.7
Sed0010238 Sechium edule HOM05D006590 ORTHO05D008427 2.2e-227 792.7 650 61.8
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 3.0e-221 772.3 648 62.3
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 3.0e-221 772.3 648 61.9
EL10Ac3g05300 Beta vulgaris HOM05D006590 ORTHO05D008427 1.8e-218 763.1 639 61.8
Os01g0655500 Oryza sativa ssp. japonica HOM05D006590 ORTHO05D008427 2.6e-217 759.2 587 63.9
Lsat_1_v5_gn_5_75160 Lactuca sativa HOM05D006590 ORTHO05D008427 3.4e-217 758.8 643 62.7
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 2.1e-214 749.6 537 69.5
BcaB08g35710 Brassica carinata HOM05D006590 ORTHO05D008427 3.0e-213 745.7 676 59.8
HPP92_006416 Vanilla planifolia HOM05D006590 ORTHO05D008427 4.4e-212 741.9 622 61.1
ATR0602G100 Amborella trichopoda HOM05D006590 ORTHO05D008427 1.7e-211 740.0 625 61.4
Potri.015G016801 Populus trichocarpa HOM05D006590 ORTHO05D008427 8.5e-208 727.6 583 65.4
Hma1.2p1_0404F.1_g145510 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 2.6e-196 689.5 460 73.3
SEGI_37244 Sequoiadendron giganteum HOM05D006590 ORTHO05D008427 6.3e-187 658.3 617 55.8
unitig_899.g15485 Utricularia gibba HOM05D006590 ORTHO05D008427 2.3e-181 639.8 632 54.0
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 2.7e-177 626.3 678 51.6
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 1.8e-173 613.6 682 50.6
AT5G53450 Arabidopsis thaliana HOM05D006590 ORTHO05D008427 1.7e-163 580.5 460 64.3
Mapoly0022s0163 Marchantia polymorpha HOM05D006590 ORTHO05D008427 2.1e-161 573.5 642 49.7
ClCG05G008870 Citrullus lanatus HOM05D006590 ORTHO05D008427 6.4e-155 552.0 432 64.8
SMO172G0068 Selaginella moellendorffii HOM05D006590 ORTHO05D008427 1.2e-150 537.7 606 48.5
Zm00001eb158040 Zea mays HOM05D006590 ORTHO05D008427 4.0e-149 532.7 357 70.9
SalBow4G1387 Salvia bowleyana HOM05D006590 ORTHO05D008427 7.3e-143 511.9 360 68.1
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 7.0e-93 345.9 262 69.8
CBR_g39728 Chara braunii HOM05D006590 ORTHO05D008427 1.2e-87 328.6 623 34.8
Potri.015G016500 Populus trichocarpa HOM05D006590 ORTHO05D008427 3.4e-71 273.9 230 60.4
Actinidia33527 Actinidia chinensis HOM05D006590 ORTHO05D008427 1.1e-66 258.8 346 44.8
Potri.015G016600 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.2e-54 218.0 158 68.4
Sabra15G0012800 Salix brachista HOM05D006590 ORTHO05D008427 7.3e-42 176.4 148 59.5
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 2.0e-39 168.3 122 68.0
Potri.015G016375 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.7e-38 165.2 144 59.0
Potri.015G016300 Populus trichocarpa HOM05D006590 ORTHO05D008427 3.8e-38 164.1 134 62.7
Hund04856 Selenicereus undatus HOM05D006590 ORTHO05D008427 2.4e-29 134.8 184 48.4
Actinidia34212 Actinidia chinensis HOM05D006590 ORTHO05D008427 4.3e-26 124.0 81 67.9
COL.COLO4_02893 Corchorus olitorius HOM05D006590 ORTHO05D008427 7.6e-23 113.2 61 85.2
CDE10G1176 Ceratophyllum demersum HOM05D006590 ORTHO05D008427 2.1e-17 95.1 58 74.1
Hma1.2p1_0404F.1_g145520 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 1.5e-15 89.0 60 68.3
CAN.G37.10 Capsicum annuum HOM05D006590 ORTHO05D008427 2.5e-13 81.6 56 69.6
Lsat_1_v5_gn_2_64600 Lactuca sativa HOM05D006590 ORTHO05D011991 1.6e-12 79.0 125 37.6
Aqoxy2G01300 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 3.7e-09 67.8 47 59.6
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 1.1e-08 66.2 369 21.4
Pp3c4_25980 Physcomitrium patens HOM05D002406 ORTHO05D007964 1.1e-08 66.2 317 25.2
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 1.8e-08 65.5 303 24.8
Oeu022120.1 Olea europaea HOM05D002406 ORTHO05D007964 3.1e-08 64.7 303 22.8
AagrBONN_evm.TU.Sc2ySwM_117.16 Anthoceros agrestis HOM05D002406 ORTHO05D007964 1.2e-07 62.8 313 21.7
Mapoly0009s0197 Marchantia polymorpha HOM05D002406 ORTHO05D007964 1.2e-07 62.8 399 23.3
Sabra10G0098600 Salix brachista HOM05D002406 ORTHO05D007964 1.5e-07 62.4 348 21.0
SMO364G0095 Selaginella moellendorffii HOM05D002406 ORTHO05D007964 2.0e-07 62.0 259 23.2
CAN.G430.6 Capsicum annuum HOM05D002406 ORTHO05D007964 4.5e-07 60.8 306 22.5
Sabra08G0088500 Salix brachista HOM05D002406 ORTHO05D007964 4.5e-07 60.8 304 21.7
FAN07G2527 Fragaria x ananassa HOM05D002406 ORTHO05D007964 5.8e-07 60.5 304 22.4
THA.LOC104808195 Tarenaya hassleriana HOM05D002406 ORTHO05D007964 5.8e-07 60.5 297 22.2
Cre02.g120250 Chlamydomonas reinhardtii HOM05D002406 ORTHO05D007964 7.6e-07 60.1 271 29.2
MD13G1046400 Malus domestica HOM05D002406 ORTHO05D007964 7.6e-07 60.1 297 21.9
Potri.008G116800 Populus trichocarpa HOM05D002406 ORTHO05D007964 1.0e-06 59.7 297 20.9
FvH4_4g28080 Fragaria vesca HOM05D002406 ORTHO05D007964 1.3e-06 59.3 304 22.0
Cpa.g.sc1.223 Carica papaya HOM05D002406 ORTHO05D007964 1.7e-06 58.9 329 21.9
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 1.7e-06 58.9 303 21.8
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 2.2e-06 58.5 297 21.5
Migut.K01266 Erythranthe guttata HOM05D002406 ORTHO05D007964 2.2e-06 58.5 297 21.5
FAN12G2143 Fragaria x ananassa HOM05D002406 ORTHO05D007964 2.2e-06 58.5 263 22.1
Nn3g17743 Nelumbo nucifera HOM05D002406 ORTHO05D007964 2.9e-06 58.2 206 24.3
Sed0011685 Sechium edule HOM05D002406 ORTHO05D007964 2.9e-06 58.2 348 20.4
unitig_52.g17148 Utricularia gibba HOM05D002406 ORTHO05D007964 2.9e-06 58.2 303 21.8
CBR_g8256 Chara braunii HOM05D002406 ORTHO05D007964 3.8e-06 57.8 324 22.8
RcHm_v2.0_Chr4g0435821 Rosa chinensis HOM05D002406 ORTHO05D007964 3.8e-06 57.8 304 22.0
Sc04g0006710 Simmondsia chinensis HOM05D002406 ORTHO05D007964 5.0e-06 57.4 297 21.9
Manes.14G097700 Manihot esculenta HOM05D002406 ORTHO05D007964 6.5e-06 57.0 309 22.0
Nitab4.5_0000597g0020 Nicotiana tabacum HOM05D002406 ORTHO05D007964 6.5e-06 57.0 297 21.2
Glyma.02G100000 Glycine max HOM05D002406 ORTHO05D007964 8.4e-06 56.6 297 21.2
Hund25103 Selenicereus undatus HOM05D002406 ORTHO05D007964 8.4e-06 56.6 322 19.9


User provided reference genes

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