Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 3.6e-55 218.0 109 100.0
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 9.7e-45 183.3 109 85.3
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 5.3e-43 177.6 109 83.5
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 8.5e-41 170.2 109 78.9
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 9.7e-37 156.8 111 75.7
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 1.1e-35 153.3 109 73.4
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 2.0e-34 149.1 109 74.3
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 5.0e-33 144.4 100 78.0
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 1.0e-17 93.6 96 51.0
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 1.6e-15 86.3 119 45.4
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 1.4e-14 83.2 92 52.2
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 1.8e-14 82.8 121 44.6
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 8.9e-14 80.5 109 45.9
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 8.9e-14 80.5 123 41.5
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 8.9e-14 80.5 123 41.5
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 8.9e-14 80.5 123 41.5
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 1.5e-13 79.7 97 49.5
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 2.0e-13 79.3 120 39.2
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.8e-13 77.8 112 44.6
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 5.8e-13 77.8 122 38.5
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 5.8e-13 77.8 89 49.4
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 7.5e-13 77.4 118 44.9
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 9.8e-13 77.0 93 46.2
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 1.7e-12 76.3 94 53.2
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 4.9e-12 74.7 111 43.2
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 4.9e-12 74.7 90 48.9
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 4.9e-12 74.7 105 43.8
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 1.1e-11 73.6 91 52.7
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 1.1e-11 73.6 126 41.3
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 1.9e-11 72.8 67 55.2
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 2.4e-11 72.4 67 56.7
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 7.0e-11 70.9 36 86.1
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 7.0e-11 70.9 89 46.1
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 1.2e-10 70.1 120 40.8
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 1.2e-10 70.1 32 93.8
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 1.6e-10 69.7 90 48.9
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 1.6e-10 69.7 85 48.2
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 1.6e-10 69.7 89 47.2
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 2.0e-10 69.3 33 87.9
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 2.7e-10 68.9 36 80.6
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 3.5e-10 68.6 33 84.8
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 3.5e-10 68.6 90 43.3
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 3.5e-10 68.6 69 53.6
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 4.6e-10 68.2 67 53.7
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 4.6e-10 68.2 33 84.8
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 6.0e-10 67.8 32 87.5
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 6.0e-10 67.8 43 74.4
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 7.8e-10 67.4 89 46.1
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.0e-09 67.0 119 42.0
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.3e-09 66.6 36 77.8
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 1.3e-09 66.6 112 38.4
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 2.3e-09 65.9 92 47.8
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 2.3e-09 65.9 30 93.3
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 2.3e-09 65.9 88 50.0
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 3.0e-09 65.5 32 87.5
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 3.0e-09 65.5 30 90.0
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 3.0e-09 65.5 32 87.5
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 3.0e-09 65.5 103 42.7
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 3.9e-09 65.1 119 41.2
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 5.0e-09 64.7 33 81.8
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 5.0e-09 64.7 33 81.8
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 5.0e-09 64.7 39 69.2
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 6.6e-09 64.3 36 75.0
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 8.6e-09 63.9 32 84.4
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 8.6e-09 63.9 32 84.4
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 8.6e-09 63.9 32 84.4
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 1.1e-08 63.5 122 38.5
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 1.1e-08 63.5 92 40.2
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 1.1e-08 63.5 31 87.1
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 1.1e-08 63.5 93 47.3
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 1.1e-08 63.5 61 54.1
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 1.5e-08 63.2 122 39.3
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 1.5e-08 63.2 98 38.8
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 1.9e-08 62.8 116 37.9
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 3.3e-08 62.0 41 68.3
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 3.3e-08 62.0 109 38.5
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 4.3e-08 61.6 84 42.9
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 7.3e-08 60.8 63 52.4
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 7.3e-08 60.8 60 53.3
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 7.3e-08 60.8 37 73.0
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 9.5e-08 60.5 83 48.2
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 9.5e-08 60.5 67 46.3
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 1.2e-07 60.1 107 42.1
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 1.6e-07 59.7 73 46.6
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 1.6e-07 59.7 37 70.3
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 2.1e-07 59.3 93 43.0
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 2.1e-07 59.3 93 43.0
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 2.1e-07 59.3 92 40.2
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 3.6e-07 58.5 97 39.2
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 4.7e-07 58.2 61 50.8
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 1.1e-06 57.0 65 49.2
Rhsim03G0206100 Rhododendron simsii HOM05D043765 ORTHO05D009048 1.1e-06 57.0 108 40.7
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 1.4e-06 56.6 63 52.4
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 1.4e-06 56.6 63 52.4
arahy.Tifrunner.gnm1.ann1.8E5M3M Arachis hypogaea HOM05D007326 ORTHO05D009048 2.3e-06 55.8 82 48.8
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 2.3e-06 55.8 48 60.4
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 3.1e-06 55.5 94 39.4
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 4.0e-06 55.1 54 50.0
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 4.0e-06 55.1 114 41.2
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 5.2e-06 54.7 84 40.5
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 6.8e-06 54.3 78 42.3
Migut.F01037 Erythranthe guttata HOM05D007326 ORTHO05D009048 8.9e-06 53.9 104 39.4
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 8.9e-06 53.9 45 53.3


User provided reference genes

Program Settings