Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 2.3e-143 512.3 277 100.0
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.1e-140 501.9 278 98.2
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 4.1e-140 501.5 278 97.8
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 6.8e-127 457.6 277 84.8
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 5.7e-126 454.5 277 87.0
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 7.8e-123 444.1 245 91.0
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.3e-122 442.6 244 90.6
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.7e-91 339.3 244 73.4
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 2.3e-90 336.3 247 70.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 5.6e-89 331.6 244 71.7
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.1e-88 329.7 278 64.4
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.8e-88 328.6 278 64.0
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.8e-87 326.6 246 70.7
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 2.4e-87 326.2 244 71.3
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 2.0e-86 323.2 243 71.2
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.6e-86 321.2 249 69.5
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 9.9e-86 320.9 268 65.3
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.9e-86 320.9 268 66.8
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.9e-86 320.9 268 69.0
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.9e-85 319.3 249 69.1
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 6.4e-85 318.2 248 69.8
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.1e-84 317.4 268 64.2
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 3.2e-84 315.8 249 68.3
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.2e-84 315.8 268 63.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 3.2e-84 315.8 247 68.8
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 3.2e-84 315.8 247 68.4
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.2e-83 313.9 278 65.5
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 4.6e-83 312.0 247 68.4
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 7.9e-83 311.2 223 72.2
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.0e-82 310.8 249 68.3
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.0e-82 309.3 246 69.5
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 6.6e-82 308.1 246 68.7
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 6.6e-82 308.1 269 64.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.9e-81 306.6 248 68.1
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.9e-81 306.6 244 68.9
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 2.5e-81 306.2 243 67.1
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.6e-80 303.5 274 63.9
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.6e-80 303.5 292 59.9
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.6e-80 303.5 244 65.2
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 2.1e-80 303.1 246 65.0
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 2.8e-80 302.8 246 65.9
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 4.8e-80 302.0 247 65.2
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.4e-79 300.4 255 65.1
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 4.0e-79 298.9 249 65.9
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 5.3e-79 298.5 285 59.6
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 2.0e-78 296.6 245 67.3
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 2.6e-78 296.2 248 65.3
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.3e-77 293.9 248 65.3
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 1.7e-77 293.5 249 66.3
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 6.4e-77 291.6 249 65.5
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 8.4e-77 291.2 244 64.8
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.1e-76 290.8 245 63.3
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.1e-76 290.8 287 59.2
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.4e-76 290.4 248 64.1
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.9e-76 290.0 255 66.7
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 3.2e-76 289.3 285 57.9
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.6e-75 287.0 248 64.1
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 2.1e-75 286.6 244 63.5
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 3.5e-75 285.8 223 70.0
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 5.1e-74 282.0 226 66.8
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.9e-73 280.0 246 63.8
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 9.6e-73 277.7 248 63.3
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.6e-70 269.6 274 57.7
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 2.6e-70 269.6 213 68.1
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 3.4e-70 269.2 289 55.7
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.3e-69 267.3 223 67.3
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.5e-69 265.0 230 63.0
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.5e-68 263.1 230 62.2
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 5.5e-68 261.9 248 62.1
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.0e-67 258.5 230 62.2
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 2.3e-66 256.5 256 57.8
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 2.3e-66 256.5 213 66.2
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 3.0e-66 256.1 213 65.7
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 3.9e-66 255.8 256 57.4
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 6.7e-66 255.0 247 61.5
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 3.7e-64 249.2 252 57.5
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 3.7e-64 249.2 266 57.1
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.1e-63 247.7 237 60.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.8e-63 246.9 246 58.9
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.5e-62 243.8 248 58.5
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.6e-59 232.6 218 60.1
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.6e-59 232.3 188 67.6
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.0e-58 231.1 247 57.1
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 3.0e-58 229.6 402 41.0
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 5.1e-58 228.8 190 67.4
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.5e-57 227.3 222 59.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.3e-57 226.1 203 62.6
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 4.3e-57 225.7 203 62.1
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 2.2e-56 223.4 183 68.3
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 2.8e-56 223.0 248 56.0
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 2.8e-56 223.0 251 54.6
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.8e-56 223.0 203 61.1
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 3.7e-56 222.6 214 60.7
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 6.3e-56 221.9 250 54.0
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.8e-55 220.3 201 62.2
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 9.0e-55 218.0 226 57.5
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 7.7e-54 214.9 248 56.5
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 4.2e-52 209.1 275 52.0
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 4.2e-52 209.1 201 63.2
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 7.2e-52 208.4 217 62.2
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 7.2e-52 208.4 217 62.2
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 7.2e-52 208.4 217 62.2
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.6e-51 207.2 220 55.0
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.0e-50 204.5 275 53.8
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 1.4e-50 204.1 195 61.0
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 2.3e-50 203.4 275 53.5
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 3.9e-50 202.6 274 50.0
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-49 200.3 186 60.8
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 2.0e-49 200.3 233 52.4
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.0e-45 188.0 244 50.8
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 3.2e-44 183.0 226 50.4
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 2.7e-43 179.9 265 43.8
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 6.7e-42 175.3 245 47.8
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 1.1e-41 174.5 183 55.7
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.9e-36 157.1 326 40.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.0e-34 151.4 220 50.5
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 2.8e-32 143.3 151 56.3
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.5e-28 129.0 127 59.1
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 9.8e-25 118.2 146 53.4
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 8.3e-24 115.2 203 45.3
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 2.4e-23 113.6 203 40.4
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 2.0e-22 110.5 227 39.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 5.5e-20 102.4 163 46.0
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.6e-19 100.9 61 75.4
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.2e-14 84.7 56 67.9
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.7e-13 80.9 54 68.5
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.9e-12 77.4 135 47.4
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 1.6e-11 74.3 149 39.6
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 2.8e-11 73.6 54 63.0
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 7.8e-06 55.5 78 48.7


User provided reference genes

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