Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 7.5e-95 350.5 179 100.0
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 4.3e-74 281.6 195 77.4
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 4.8e-73 278.1 187 78.6
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 7.4e-66 254.2 166 83.7
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 8.1e-65 250.8 188 73.4
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.5e-63 245.0 189 72.0
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.0e-62 243.8 191 71.2
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.1e-61 240.4 171 76.6
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 4.2e-61 238.4 195 70.8
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.2e-60 236.9 189 71.4
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.2e-60 236.9 194 68.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.0e-59 233.8 191 68.1
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.3e-59 232.6 190 72.6
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 3.7e-57 225.3 198 67.7
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.1e-51 204.9 179 64.2
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.2e-47 193.7 180 61.7
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.5e-47 191.8 184 57.6
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 5.0e-46 188.3 184 56.5
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 3.2e-45 185.7 178 57.9
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.6e-44 183.3 182 57.1
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.1e-44 183.0 175 61.1
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 5.1e-43 178.3 178 53.9
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.1e-42 177.2 177 55.9
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.5e-42 176.8 175 57.1
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.5e-42 176.0 181 56.9
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 7.4e-42 174.5 175 55.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 7.4e-42 174.5 181 55.2
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 2.2e-41 172.9 214 50.0
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.7e-41 172.2 166 57.8
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 4.8e-41 171.8 173 56.1
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.8e-40 169.9 175 58.3
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.8e-40 169.9 177 54.2
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 4.1e-40 168.7 166 55.4
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 6.9e-40 167.9 188 48.4
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.6e-39 166.0 168 53.0
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.3e-38 163.7 190 52.1
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 2.2e-38 162.9 189 47.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.9e-38 162.5 179 54.2
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.0e-38 161.8 200 55.0
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 8.5e-38 161.0 180 52.8
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.1e-37 160.6 171 52.6
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.1e-37 160.6 188 50.5
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.9e-37 159.8 169 52.7
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-37 159.1 184 51.1
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.2e-37 158.7 176 50.6
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 5.5e-37 158.3 174 55.2
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 5.5e-37 158.3 188 48.4
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 7.2e-37 157.9 177 50.3
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 9.4e-37 157.5 184 47.8
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.1e-36 156.4 197 51.3
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 2.7e-36 156.0 176 52.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.7e-36 155.2 184 50.0
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 4.7e-36 155.2 187 47.1
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.1e-36 154.8 179 50.8
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 6.1e-36 154.8 180 48.9
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 1.4e-35 153.7 174 53.4
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.4e-35 153.7 185 48.6
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.8e-35 153.3 182 49.5
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.8e-35 153.3 177 52.5
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 2.3e-35 152.9 175 47.4
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 5.1e-35 151.8 178 48.3
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 5.1e-35 151.8 192 46.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.8e-35 151.0 183 49.7
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 8.8e-35 151.0 167 52.7
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.1e-34 150.6 190 46.8
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-34 150.2 192 45.8
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-34 150.2 192 46.4
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.5e-34 150.2 187 49.2
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.5e-34 150.2 191 47.1
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 2.0e-34 149.8 178 47.8
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.6e-34 149.4 176 47.2
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 3.3e-34 149.1 190 50.5
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 4.4e-34 148.7 179 50.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 4.4e-34 148.7 178 47.8
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 4.4e-34 148.7 178 47.8
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 5.7e-34 148.3 180 47.8
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 7.4e-34 147.9 173 49.7
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.3e-33 147.1 176 51.1
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-33 146.7 159 50.3
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 2.8e-33 146.0 169 50.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.8e-33 146.0 181 45.9
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 2.8e-33 146.0 186 45.7
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.7e-33 145.6 181 50.8
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 3.7e-33 145.6 190 46.8
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.3e-33 144.8 182 45.1
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.2e-33 144.4 178 45.5
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.4e-32 143.7 172 49.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.4e-32 143.7 179 46.9
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-32 142.9 168 46.4
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 3.1e-32 142.5 178 46.6
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-32 142.1 178 47.2
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 5.3e-32 141.7 165 46.1
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 5.3e-32 141.7 179 48.6
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 7.0e-32 141.4 180 46.1
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 7.0e-32 141.4 163 47.9
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 7.0e-32 141.4 173 47.4
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-31 140.6 170 47.6
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-31 140.6 179 46.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.2e-31 140.6 179 46.9
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.2e-31 140.6 177 46.9
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 1.5e-31 140.2 186 47.8
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.5e-31 140.2 186 48.9
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 2.0e-31 139.8 178 47.2
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 2.0e-31 139.8 178 47.2
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 2.0e-31 139.8 192 46.9
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.6e-31 139.4 173 46.8
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 2.6e-31 139.4 173 46.8
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 4.5e-31 138.7 181 45.9
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 5.9e-31 138.3 178 46.6
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 7.7e-31 137.9 179 45.8
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.5e-30 134.8 172 48.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 6.5e-30 134.8 147 51.0
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.5e-30 134.4 181 44.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.1e-29 134.0 187 48.1
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 7.2e-29 131.3 189 42.9
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 2.1e-28 129.8 173 47.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.7e-28 129.4 191 39.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.1e-28 128.3 183 45.9
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 8.0e-28 127.9 195 44.6
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.0e-27 127.5 178 43.3
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.0e-27 127.5 178 41.6
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.4e-27 127.1 178 44.4
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.0e-27 125.9 192 39.6
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 3.9e-27 125.6 171 46.8
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.9e-27 125.6 181 43.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.9e-27 125.6 191 39.3
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 3.9e-27 125.6 173 45.7
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 8.8e-27 124.4 186 43.0
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.1e-26 124.0 197 41.1
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.1e-26 124.0 197 41.1
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.1e-26 124.0 197 41.1
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 5.7e-26 121.7 188 41.5
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 5.7e-26 121.7 183 41.0
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.3e-25 120.6 187 40.6
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-25 120.6 160 46.2
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.8e-25 119.4 291 30.2
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.8e-25 119.4 185 41.6
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 4.8e-25 118.6 188 41.0
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 4.8e-25 118.6 188 41.0
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 4.8e-25 118.6 188 41.0
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.8e-25 118.6 174 48.9
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 8.2e-25 117.9 160 45.0
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-24 115.5 140 46.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 7.0e-24 114.8 174 43.7
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.6e-23 112.8 169 43.2
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.9e-22 109.4 166 41.6
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 5.0e-22 108.6 170 43.5
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.9e-21 106.7 170 42.9
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.6e-20 102.4 161 42.2
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.0e-20 101.3 100 52.0
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.0e-19 99.4 145 44.8
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 1.2e-18 97.4 74 77.0
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 7.5e-18 94.7 213 33.3
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-17 91.7 99 48.5
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.1e-16 90.9 173 36.4
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.1e-16 90.9 114 42.1
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.1e-16 90.9 111 42.3
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-14 82.8 93 48.4
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-13 80.1 172 37.8
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 2.5e-13 79.7 164 36.6
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 4.2e-13 79.0 210 32.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-12 77.4 94 45.7
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 1.6e-12 77.0 164 32.9
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.7e-12 76.3 141 41.8
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.7e-12 76.3 219 29.7
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.4e-11 73.9 189 30.7
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-11 73.6 128 38.3
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 4.0e-11 72.4 145 33.8
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 6.8e-11 71.6 81 51.9
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.2e-10 70.9 207 34.3
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.4e-10 68.9 195 31.8
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 9.8e-10 67.8 142 36.6
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-09 66.6 88 39.8
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.7e-09 65.9 170 34.1
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.9e-09 65.5 170 31.8
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-07 60.8 71 49.3
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.6e-07 60.5 187 29.9
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.7e-07 59.7 50 50.0
TAR629G3365 Trochodendron aralioides HOM05D001131 ORTHO05D000972 2.7e-07 59.7 190 28.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 3.5e-07 59.3 203 34.0
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 4.5e-07 58.9 175 32.0
TAR371G0961 Trochodendron aralioides HOM05D001131 ORTHO05D000972 1.3e-06 57.4 199 28.1
Sed0004223 Sechium edule HOM05D001131 ORTHO05D000972 1.7e-06 57.0 186 31.2
SEGI_15239 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.3e-06 56.6 196 29.1
ClCG05G012470 Citrullus lanatus HOM05D001131 ORTHO05D000972 2.9e-06 56.2 217 27.6
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 2.9e-06 56.2 195 26.7
ATR0580G176 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.8e-06 55.8 99 36.4
Sed0010143 Sechium edule HOM05D001131 ORTHO05D000972 8.6e-06 54.7 212 27.4


User provided reference genes

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