Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 7.0e-235 817.0 437 100.0
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.0e-230 803.1 433 98.4
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 6.7e-230 800.4 433 97.9
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 6.1e-215 750.7 436 91.5
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 7.0e-195 684.1 437 84.4
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 6.8e-182 641.0 426 81.7
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.6e-168 594.7 437 73.2
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.4e-165 585.5 434 71.7
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 9.9e-165 583.9 434 71.4
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.4e-163 580.1 436 70.0
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 2.7e-162 575.9 432 69.7
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.5e-162 575.5 429 70.6
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 4.6e-162 575.1 432 70.6
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 5.1e-161 571.6 428 71.0
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.5e-160 569.3 432 69.2
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 2.1e-159 566.2 444 68.2
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.6e-159 565.5 430 69.5
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.2e-159 564.7 433 69.1
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 8.1e-159 564.3 432 69.2
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.1e-158 563.9 432 69.9
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.4e-158 563.5 429 69.2
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 4.0e-158 562.0 431 70.1
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 5.3e-158 561.6 432 68.1
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 6.9e-158 561.2 431 70.1
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 4.9e-156 555.1 431 69.1
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 6.4e-156 554.7 431 68.4
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.4e-155 553.5 433 67.4
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.2e-155 552.4 429 67.8
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.2e-155 552.4 429 68.3
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 3.2e-155 552.4 428 68.2
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 4.2e-155 552.0 423 69.0
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.2e-154 550.4 429 68.1
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 6.0e-154 548.1 427 69.6
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.9e-154 547.7 430 68.1
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.8e-153 546.6 429 67.6
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 3.0e-153 545.8 429 66.9
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 3.0e-153 545.8 429 67.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 5.1e-153 545.0 431 67.1
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.9e-152 543.1 430 67.0
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.5e-152 542.7 437 66.1
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 7.4e-152 541.2 422 70.9
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 7.4e-152 541.2 434 66.8
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.3e-151 540.4 430 65.3
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 4.8e-151 538.5 413 68.5
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.4e-150 537.0 428 65.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 4.0e-150 535.4 437 65.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.2e-149 533.9 432 66.2
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.6e-149 532.7 429 66.2
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.4e-149 532.3 432 66.2
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-148 530.8 436 65.4
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-148 530.4 469 63.1
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.7e-148 530.0 440 64.3
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.9e-148 529.3 429 65.7
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.9e-147 526.6 437 64.5
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 9.3e-147 524.2 432 66.4
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 2.1e-146 523.1 429 64.8
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.5e-146 522.3 372 72.8
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 6.0e-146 521.5 431 65.9
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.0e-146 521.5 429 65.5
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 7.9e-146 521.2 429 64.6
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 3.0e-145 519.2 427 66.0
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.9e-145 518.8 432 65.3
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 3.9e-145 518.8 432 66.0
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 3.9e-145 518.8 433 65.6
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.9e-145 518.8 433 65.8
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.9e-145 518.8 431 65.4
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 6.7e-145 518.1 429 66.7
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 6.7e-145 518.1 429 66.7
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 8.7e-145 517.7 432 64.8
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.5e-144 516.9 436 64.9
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.9e-144 516.5 432 65.7
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 2.5e-144 516.2 429 65.7
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 7.4e-144 514.6 439 64.5
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 9.6e-144 514.2 433 64.7
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 9.6e-144 514.2 435 63.9
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 9.6e-144 514.2 432 64.8
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.3e-143 513.8 433 64.7
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.3e-143 513.8 431 64.7
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.8e-143 512.7 439 63.1
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 8.2e-143 511.1 431 65.0
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.1e-142 510.8 437 68.2
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.4e-142 509.6 434 63.6
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 9.0e-142 507.7 433 61.9
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.5e-141 506.9 427 66.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 7.6e-141 504.6 433 62.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.0e-140 504.2 434 62.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 1.0e-140 504.2 429 61.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.2e-140 503.1 430 63.5
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.9e-140 502.7 428 64.3
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.2e-139 499.2 436 61.9
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 9.3e-139 497.7 429 63.9
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.1e-138 496.5 412 63.8
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.5e-138 495.7 431 59.9
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 3.5e-138 495.7 437 60.0
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.0e-137 494.2 431 61.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.3e-137 493.0 431 62.6
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.5e-136 490.3 519 54.5
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.3e-136 489.2 439 61.0
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 4.3e-136 488.8 428 63.1
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 9.7e-136 487.6 428 62.6
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.8e-135 486.1 391 65.5
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 6.3e-135 485.0 405 64.0
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 5.9e-133 478.4 430 61.4
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.0e-132 477.6 435 60.9
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.3e-132 477.2 434 60.1
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.3e-132 477.2 432 62.3
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 5.0e-132 475.3 429 61.1
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 5.0e-132 475.3 413 63.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.4e-131 473.8 472 58.1
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-130 470.7 429 60.6
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 3.9e-129 465.7 432 59.3
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.5e-128 463.8 428 61.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.7e-128 461.8 412 60.7
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.7e-127 460.3 436 59.6
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.5e-124 448.4 430 59.3
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.0e-121 441.0 433 59.4
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 4.4e-120 435.6 432 56.7
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 8.2e-119 431.4 433 56.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 4.1e-118 429.1 428 55.8
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 5.0e-116 422.2 437 57.7
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.2e-114 417.5 513 50.1
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.0e-113 414.5 436 54.4
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 7.4e-112 408.3 313 69.6
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.2e-103 380.2 342 61.4
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.2e-101 374.4 319 63.3
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.7e-100 370.5 300 65.7
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.9e-99 367.1 322 64.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.1e-91 341.3 431 43.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.4e-88 329.7 422 43.6
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.2e-85 321.2 275 59.3
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.5e-83 314.3 327 56.6
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.3e-75 286.6 250 61.2
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 8.3e-71 271.9 178 75.3
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 4.1e-70 269.6 204 71.1
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.2e-69 268.1 424 42.7
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.2e-65 252.7 177 72.9
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.4e-55 219.2 192 59.4
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.2e-54 216.5 176 61.4
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.3e-50 204.9 172 61.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.8e-50 203.0 161 66.5
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.0e-41 172.2 147 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.2e-40 171.8 139 58.3
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 8.1e-34 149.1 242 42.1
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 4.0e-33 146.7 120 68.3
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.0e-32 144.4 113 69.9
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-24 118.6 89 65.2
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.3e-22 109.0 97 56.7
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.7e-18 97.1 94 57.4
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.1e-17 93.6 79 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.6e-16 90.9 113 45.1
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.1e-13 81.3 329 28.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.2e-10 71.2 375 25.1
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 2.2e-10 71.2 419 24.8
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.5e-06 57.8 204 28.4
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 3.2e-06 57.4 55 52.7


User provided reference genes

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