Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 1.2e-231 806.2 422 100.0
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 2.4e-224 781.9 422 96.4
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 6.1e-220 767.3 422 95.3
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 6.5e-206 720.7 426 89.7
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 4.9e-161 571.6 328 89.6
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.9e-158 562.0 330 88.5
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.0e-142 510.8 349 79.7
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 1.1e-139 500.7 399 65.4
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 1.7e-137 493.4 423 65.0
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.4e-136 490.3 430 61.9
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 3.5e-135 485.7 439 62.2
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 5.1e-134 481.9 382 66.5
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 1.1e-131 474.2 439 59.9
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 5.3e-131 471.9 433 60.3
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 2.6e-130 469.5 424 58.7
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 6.5e-129 464.9 399 62.2
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 9.3e-128 461.1 437 60.2
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 7.9e-127 458.0 434 59.7
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 1.8e-126 456.8 427 59.5
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 5.7e-125 451.8 437 59.7
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 7.4e-125 451.4 412 60.7
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 2.2e-124 449.9 404 62.1
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.8e-124 449.5 400 60.2
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 6.3e-124 448.4 384 63.3
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 8.2e-124 448.0 435 58.4
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 1.1e-123 447.6 381 63.0
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.4e-123 446.4 412 60.9
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 3.1e-123 446.0 392 61.5
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 1.2e-122 444.1 382 63.1
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.6e-122 443.0 412 60.0
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.2e-121 439.9 413 60.5
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.2e-121 439.9 404 60.9
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 2.9e-121 439.5 406 59.1
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 3.8e-121 439.1 388 63.9
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.2e-119 434.1 413 60.8
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.6e-119 433.7 429 57.6
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 4.7e-119 432.2 384 60.4
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 4.7e-119 432.2 448 56.2
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 1.5e-117 427.2 380 60.8
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 2.6e-117 426.4 423 58.2
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 1.7e-116 423.7 427 57.1
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 2.4e-115 419.9 387 62.0
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 9.1e-115 417.9 419 56.3
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 2.0e-114 416.8 407 57.2
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.6e-114 416.4 509 49.9
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.7e-114 414.8 419 56.3
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 1.1e-112 411.0 424 53.5
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 3.2e-112 409.5 430 54.9
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 4.2e-112 409.1 437 53.8
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.2e-111 407.5 339 63.4
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 4.8e-108 395.6 437 54.2
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 1.1e-107 394.4 385 56.1
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 7.0e-107 391.7 421 53.9
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.2e-106 391.0 421 53.4
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 3.5e-106 389.4 425 55.1
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 5.9e-106 388.7 377 56.5
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 7.7e-106 388.3 428 54.4
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 1.3e-105 387.5 366 58.7
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 3.8e-105 386.0 386 55.7
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 6.5e-105 385.2 386 55.4
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 8.5e-105 384.8 385 54.8
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 8.5e-105 384.8 427 52.0
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.1e-104 384.4 423 52.0
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.5e-104 384.0 389 55.5
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 2.5e-104 383.3 432 51.9
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.2e-104 382.9 388 55.7
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 4.2e-104 382.5 386 55.2
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 7.2e-104 381.7 387 55.3
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 7.2e-104 381.7 377 55.7
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.2e-103 380.9 385 54.8
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 1.5e-101 374.0 445 50.1
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 7.5e-101 371.7 411 52.3
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 7.5e-101 371.7 429 51.0
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 1.7e-100 370.5 386 53.6
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 2.0e-98 363.6 398 52.5
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 2.9e-97 359.8 419 50.4
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 7.2e-96 355.1 318 61.3
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 9.4e-96 354.8 444 49.3
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 1.8e-94 350.5 385 53.0
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 1.7e-92 344.0 438 47.5
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 3.7e-92 342.8 423 49.9
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 5.9e-90 335.5 337 56.1
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 2.3e-89 333.6 437 45.5
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 3.8e-89 332.8 438 45.2
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 6.1e-87 325.5 417 48.0
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 1.4e-86 324.3 422 46.4
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.7e-81 307.4 365 52.1
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 9.5e-80 301.6 445 43.1
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 2.6e-77 293.5 534 39.5
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 7.0e-75 285.4 402 44.0
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.0e-74 283.9 414 44.2
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.3e-73 281.2 216 66.7
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 3.9e-73 279.6 388 46.4
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 8.0e-71 271.9 339 48.1
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.1e-67 261.5 346 46.2
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.7e-66 256.9 201 65.7
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 2.8e-63 246.9 431 38.5
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 1.1e-62 245.0 287 48.4
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.3e-60 238.0 250 52.0
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 1.2e-47 194.9 430 36.3
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 1.1e-46 191.8 321 40.2
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.1e-40 171.8 386 35.8
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 3.3e-40 170.2 381 32.3
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.3e-39 168.3 387 35.7
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.2e-37 161.8 206 46.6
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 2.2e-36 157.5 422 30.8
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.4e-35 154.8 112 68.8
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 1.0e-33 148.7 294 38.4
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 1.4e-30 138.3 407 29.5
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 8.7e-25 119.0 168 46.4
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 1.1e-22 112.1 94 60.6
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 5.3e-22 109.8 114 58.8
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.9e-19 101.3 137 49.6
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 3.7e-15 87.0 253 31.6
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 4.8e-15 86.7 202 32.7
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 3.1e-14 84.0 100 50.0
Dinv35575 Davidia involucrata HOM05D006045 ORTHO05D007678 4.1e-14 83.6 208 34.6
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 9.4e-11 72.4 99 45.5
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.1e-06 57.4 159 32.7
Glyma.10G191650 Glycine max HOM05D006045 ORTHO05D007678 5.3e-06 56.6 91 38.5


User provided reference genes

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