Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.1e-36 155.2 79 100.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.2e-28 129.4 78 83.3
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.2e-28 129.4 78 83.3
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.2e-28 129.4 78 83.3
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 7.8e-28 126.7 78 80.8
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.3e-27 125.9 78 82.1
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 6.6e-27 123.6 78 80.8
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 2.5e-26 121.7 78 78.2
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.6e-25 119.0 78 71.8
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.6e-25 119.0 78 71.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.6e-25 117.9 78 71.8
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 8.1e-25 116.7 78 73.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 8.1e-25 116.7 78 71.8
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.1e-24 116.3 78 73.1
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.4e-24 115.2 78 71.8
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 3.1e-24 114.8 78 71.8
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.1e-24 114.8 78 71.8
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 3.1e-24 114.8 78 69.2
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 4.0e-24 114.4 75 72.0
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 5.2e-24 114.0 78 69.2
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 5.2e-24 114.0 78 69.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 5.2e-24 114.0 75 69.3
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 6.9e-24 113.6 78 70.5
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 6.9e-24 113.6 78 69.2
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 9.0e-24 113.2 78 69.2
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 9.0e-24 113.2 78 69.2
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 9.0e-24 113.2 78 67.9
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 9.0e-24 113.2 78 67.9
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 9.0e-24 113.2 78 70.5
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.2e-23 112.8 78 70.5
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.2e-23 112.8 78 69.2
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.2e-23 112.8 75 72.0
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.5e-23 112.5 78 67.9
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 2.0e-23 112.1 78 69.2
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.0e-23 112.1 78 67.9
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.6e-23 111.7 74 70.3
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 3.4e-23 111.3 78 67.9
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 3.4e-23 111.3 78 69.2
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.4e-23 111.3 78 67.9
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 4.4e-23 110.9 78 67.9
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.4e-23 110.9 78 67.9
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 4.4e-23 110.9 78 65.4
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 5.8e-23 110.5 78 67.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 5.8e-23 110.5 78 69.2
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 5.8e-23 110.5 78 66.7
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 5.8e-23 110.5 78 66.7
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 5.8e-23 110.5 78 66.7
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 5.8e-23 110.5 78 69.2
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 5.8e-23 110.5 77 68.8
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 5.8e-23 110.5 74 68.9
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 7.6e-23 110.2 75 68.0
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 7.6e-23 110.2 78 65.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 7.6e-23 110.2 78 66.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 66.7
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 65.4
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 65.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 65.4
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 65.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 65.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 65.4
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 66.7
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 9.9e-23 109.8 78 65.4
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 9.9e-23 109.8 78 65.4
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.3e-22 109.4 78 66.7
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.3e-22 109.4 78 66.7
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.3e-22 109.4 78 65.4
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.3e-22 109.4 78 66.7
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.7e-22 109.0 78 64.1
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.7e-22 109.0 78 66.7
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.7e-22 109.0 78 66.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.7e-22 109.0 78 66.7
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.7e-22 109.0 78 66.7
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.7e-22 109.0 78 66.7
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.7e-22 109.0 75 66.7
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 2.2e-22 108.6 78 62.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.2e-22 108.6 78 67.9
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.9e-22 108.2 78 65.4
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 2.9e-22 108.2 78 65.4
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.9e-22 108.2 78 65.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.8e-22 107.8 78 64.1
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 3.8e-22 107.8 77 68.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 4.9e-22 107.5 78 65.4
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 6.4e-22 107.1 78 65.4
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 8.4e-22 106.7 78 64.1
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 8.4e-22 106.7 78 64.1
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 8.4e-22 106.7 78 65.4
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.4e-21 105.9 78 65.4
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.4e-21 105.9 78 65.4
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 4.2e-21 104.4 85 62.4
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 5.4e-21 104.0 78 61.5
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 7.1e-21 103.6 73 65.8
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 7.1e-21 103.6 78 62.8
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 7.1e-21 103.6 76 63.2
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 7.1e-21 103.6 96 55.2
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 9.3e-21 103.2 74 64.9
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 9.3e-21 103.2 78 65.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 9.3e-21 103.2 74 66.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-20 102.8 78 60.3
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.6e-20 102.4 78 65.4
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.6e-20 102.4 78 61.5
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.1e-20 102.1 74 64.9
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 5.1e-19 97.4 95 54.7
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 9.6e-18 93.2 68 61.8
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.6e-17 92.4 83 57.8
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.1e-17 92.0 74 55.4
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.1e-16 89.7 78 55.1
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 4.5e-15 84.3 99 49.5
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 6.4e-14 80.5 68 51.5
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 5.4e-13 77.4 51 70.6
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 9.3e-13 76.6 62 53.2
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.7e-12 75.1 59 61.0
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 4.3e-10 67.8 72 41.7
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.2e-09 63.9 51 56.9
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 2.6e-07 58.5 45 60.0
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 2.6e-07 58.5 46 58.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.3e-06 56.2 69 39.1
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.7e-06 55.8 71 38.0
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-06 55.8 51 45.1
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-06 54.7 73 41.1


User provided reference genes

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